Pairwise Alignments

Query, 598 a.a., DNA primase from Herbaspirillum seropedicae SmR1

Subject, 587 a.a., DNA primase from Vibrio cholerae E7946 ATCC 55056

 Score =  404 bits (1037), Expect = e-117
 Identities = 228/482 (47%), Positives = 304/482 (63%), Gaps = 28/482 (5%)

Query: 2   IPQSFIQDLLNRVDIVDVVGRYVQLKKGGANFMGLCPFHNEKSPSFTVSPTKQFYHCFGC 61
           IP+SFI DLL R+DIVDV+   V+LKK G N+   CPFHNEK+PSF+VS  KQFYHCFGC
Sbjct: 5   IPRSFIDDLLARLDIVDVIDARVKLKKKGKNYSACCPFHNEKTPSFSVSQEKQFYHCFGC 64

Query: 62  GAHGTAISFLIEYSGMGFVEAVKDLAQNVGMVVP--EREDSIPLAQRQE--KQAKSMALS 117
           GAHG AI F++EY  M F EA+++LA  +G+ V   ER  S P A+     K     +L 
Sbjct: 65  GAHGNAIDFVMEYERMEFPEAIEELASTIGLEVQREERTPSSPFAKNTPAVKSEDKRSLY 124

Query: 118 DVMTRANDFYRHQLR--SAQPAIAYLKGRGLTGEIAARFGLGYSPDEWDSLRQVFPDY-- 173
           D+M     FYR QL+  + + AI YLK RGL+GEI  +FG+GY  DEWD +R+ F     
Sbjct: 125 DLMGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNFGQQRS 184

Query: 174 DNEALVESGLVIDKSEEGGAHRKRYDRFRGRIMFPIRNTKGQVIGFGGRVMDGGEPKYLN 233
             + LV +G++I+       + +RYDRFRGR+MFPIR+ +G+VIGFGGR+ + G PKYLN
Sbjct: 185 SEDMLVTAGMLIEND-----NGRRYDRFRGRVMFPIRDRRGRVIGFGGRITEQGTPKYLN 239

Query: 234 SPETPLFQKGSELYGLFEARQAIREAGYALVTEGYMDVVALAQLGFPQAVATLGTACTPI 293
           SPETP+F KG ELYGL+E  QA RE    LV EGYMDVVALAQ G   +VA+LGT+ T  
Sbjct: 240 SPETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGTSTTGD 299

Query: 294 HVQKLVRQTDQVIFSFDGDNAGRRAARRALEACLPHASDNKTIKFLFLPKEHDPDSYVRE 353
           H+Q L RQT+ VI  +DGD AGR AA RALE  L +      +KFLFLP   DPDSYVR+
Sbjct: 300 HLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFLPDGEDPDSYVRK 359

Query: 354 MGAPAFEEQIREALPLSQFLLREII--GENDLRTPEGRAHAQFAAKPLLQALPASALRLQ 411
            G   FE+Q+  A PLSQ+L   +I   + +L + EG++  +  A PL+  +P   L+  
Sbjct: 360 YGKADFEQQVANATPLSQYLFENLIELHQINLGSHEGKSALRAVATPLIDKIPDPFLQEI 419

Query: 412 IVRSVAQATQSTPAELEVLFELEKPVARV---RAAPARSKRTAPVGLERQIMRLLVAHPQ 468
           + + + + T           +L +  AR    R AP ++ +  P+   R ++ LL+ +P 
Sbjct: 420 LEKLLDERTGFD-------HQLRRKKARKTENRPAPHKAIKRTPM---RDVIALLIQNPS 469

Query: 469 LA 470
            A
Sbjct: 470 YA 471