Pairwise Alignments

Query, 598 a.a., DNA primase from Herbaspirillum seropedicae SmR1

Subject, 620 a.a., DNA primase (NCBI) from Rhodospirillum rubrum S1H

 Score =  314 bits (804), Expect = 8e-90
 Identities = 171/398 (42%), Positives = 245/398 (61%), Gaps = 14/398 (3%)

Query: 2   IPQSFIQDLLNRVDIVDVVGRYVQLKKGGANFMGLCPFHNEKSPSFTVSPTKQFYHCFGC 61
           +P +F+ +L  R+ +  VVGR V+L + G  F+GLCPFHNEKSPSFTV+  K F+HCFGC
Sbjct: 3   LPNAFLDELRARLTLSSVVGRRVKLARKGREFLGLCPFHNEKSPSFTVNDEKGFFHCFGC 62

Query: 62  GAHGTAISFLIEYSGMGFVEAVKDLAQNVGMVVPEREDSIPLAQRQEKQAKSMALSDVMT 121
           GAHG  I F +  + + F EAV+ L+   G+ +P        A+ +++  ++ +  ++M 
Sbjct: 63  GAHGDVIGFEMRAANIAFREAVERLSAEAGLEMPRET-----AEDRDRSRQAASHREIME 117

Query: 122 RANDFYRHQLR--SAQPAIAYLKGRGLTGEIAARFGLGYSPDEWDSLRQVFP--DYDNEA 177
            A  FY+  LR    + A+ YL+GRGL     ARF LG+SP +  +L+        D +A
Sbjct: 118 MACAFYQKALRLPEGRGAMEYLRGRGLDDATLARFRLGFSP-QGGALKAALAREGVDEQA 176

Query: 178 LVESGLVIDKSEEGGAHRKRYDRFRGRIMFPIRNTKGQVIGFGGRVMDGGEPKYLNSPET 237
           +V+ GL++ +S++G   R  +D FRGR+MFPI +  G+V+ FG R++  G+PKYLNSP+T
Sbjct: 177 MVDLGLIL-RSDDG---RPAFDYFRGRVMFPIGDPAGRVVAFGARILGEGQPKYLNSPDT 232

Query: 238 PLFQKGSELYGLFEARQAIREAGYALVTEGYMDVVALAQLGFPQAVATLGTACTPIHVQK 297
           PLF KG  LY L  AR+A R++G  +V EGYMDV+ALA+ G   AVA LGTA T   ++ 
Sbjct: 233 PLFHKGHSLYNLGPAREAARQSGAIIVAEGYMDVIALARAGLGWAVAPLGTALTEAQMEA 292

Query: 298 LVRQTDQVIFSFDGDNAGRRAARRALEACLPHASDNKTIKFLFLPKEHDPDSYVREMGAP 357
           L R   + +  FDGD AGRRAA RA+E  LP     ++++F  LP   DPD  +RE G  
Sbjct: 293 LWRTIPEPVLCFDGDGAGRRAAARAMERALPLIGPGRSLRFALLPGGRDPDDLLREGGPV 352

Query: 358 AFEEQIREALPLSQFLLREIIGENDLRTPEGRAHAQFA 395
           A  + +  A+P S+   RE+     L TPE RA  + A
Sbjct: 353 ALRQVLDVAVPFSEMAWRELSEGQALTTPEQRAALEAA 390