Pairwise Alignments

Query, 598 a.a., DNA primase from Herbaspirillum seropedicae SmR1

Subject, 749 a.a., DNA primase DnaG from Phaeobacter inhibens DSM 17395

 Score =  275 bits (704), Expect = 4e-78
 Identities = 166/418 (39%), Positives = 237/418 (56%), Gaps = 19/418 (4%)

Query: 2   IPQSFIQDLLNRVDIVDVVGRYV-----QLKKGGANFMGLCPFHNEKSPSFTVSPTKQFY 56
           +P  F+ +L  RV +  VVGR V     +  +G  +    CPFH+EKS SF V   K FY
Sbjct: 3   LPPGFLDELRTRVSLTQVVGRKVMWDQRKSNQGKGDMWAPCPFHHEKSASFHVDDRKGFY 62

Query: 57  HCFGCGAHGTAISFLIEYSGMGFVEAVKDLAQNVGMVVPEREDSIPLAQRQEKQAKSMAL 116
           +CFGC A G A+ F+ E   +GF+EAV+ LAQ  GM +P R+      + Q+KQ     L
Sbjct: 63  YCFGCHAKGDALKFVQETENVGFMEAVQILAQEAGMEMPARDP-----RAQQKQDHRAQL 117

Query: 117 SDVMTRANDFYRHQL--RSAQPAIAYLKGRGLTGEIAARFGLGYSPDEWDSLRQVF--PD 172
           ++VM +A  F+R QL  R+ + A +YL  RGL+G    R+ +G++P+ W +L        
Sbjct: 118 AEVMEQAVRFFRLQLNTRAGEGARSYLARRGLSGPALERWEIGFAPEGWQNLWDALRGKG 177

Query: 173 YDNEALVESGLVIDKSEEGGAHRKRYDRFRGRIMFPIRNTKGQVIGFGGRVMDGGE-PKY 231
              E ++ +GL    S +GG   K YD FR RIMFPIR+ +G+ I FGGR MD  +  KY
Sbjct: 178 VPEELIMGAGLA-KPSNKGG---KPYDTFRNRIMFPIRDARGRAIAFGGRAMDPRDNAKY 233

Query: 232 LNSPETPLFQKGSELYGLFEARQAIREAGYALVTEGYMDVVALAQLGFPQAVATLGTACT 291
           LNSPET LF KG  LY    AR A  ++G  LV EGYMDV+ALA+ GF  +VA LGTA T
Sbjct: 234 LNSPETALFDKGRSLYNHGPARTASGKSGQLLVAEGYMDVIALAEGGFEASVAPLGTAIT 293

Query: 292 PIHVQKLVRQTDQVIFSFDGDNAGRRAARRALEACLPHASDNKTIKFLFLPKEHDPDSYV 351
              +Q L R  D+ I + DGD AG RAA R ++  LP     K+++F  +P+  DPD  +
Sbjct: 294 ENQLQMLWRIADEPIIALDGDTAGLRAAMRLIDLALPLLEAGKSLRFALMPEGKDPDDLI 353

Query: 352 REMGAPAFEEQIREALPLSQFLLREIIGENDLRTPEGRAHAQFAAKPLLQALPASALR 409
           R  G  A +  + +A+P+ + L +         +PE +A    A +  ++ +   ++R
Sbjct: 354 RGEGREAVQAVLDQAMPMVRLLWQRETEGKVFDSPERKAALDKALRDKIRLIRDPSIR 411