Pairwise Alignments

Query, 598 a.a., DNA primase from Herbaspirillum seropedicae SmR1

Subject, 599 a.a., DNA primase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  229 bits (583), Expect = 3e-64
 Identities = 162/496 (32%), Positives = 250/496 (50%), Gaps = 34/496 (6%)

Query: 5   SFIQDLLNRVDIVDVVGRYVQLKK-GGANFMGLCPFHNEKSPSFTVSPTKQFYHCFGCGA 63
           S +Q +  R+++V+V  RYV+L+  GG  +M  CPFH E  PSF+++  + F++CFGC A
Sbjct: 7   SVVQAIKARLNLVEVARRYVELRHTGGPRWMAPCPFHQETKPSFSINEEEGFFYCFGCQA 66

Query: 64  HGTAISFLIEYSGMGFVEAVKDLAQNVGMVVPEREDSIPLAQRQEK-QAKSMALSDVMTR 122
            G    F     G+ F E ++ LA+  G+ + +     P  QR++  + + + + DV   
Sbjct: 67  SGDIFDFYGRIHGLEFRETLEALAEEAGVSLEDDWKPDPKVQREQSFKRQCLRMYDV--- 123

Query: 123 ANDFYRHQLR--SAQPAIAYLKGRGLTGEIAARFGLGYSPDEWDSLRQVFP--DYDNEAL 178
           A + +R  L   + Q    Y+  R L+ EI   F LG+S  EW +L        +     
Sbjct: 124 AREHFRRNLTIPAGQECRDYIARRQLSPEIVNGFELGWSLREWSALADALRRGGFQQADA 183

Query: 179 VESGLVIDKSEEGGAHRKRYDRFRGRIMFPIRNTKGQVIGFGGRVM-DGGEPKYLNSPET 237
            ++GL + +++ G    + +DRFRGR++FPI+N  GQVI FGGR++ D  + KY+NS ++
Sbjct: 184 AQAGL-LSRNDAG----RMFDRFRGRMIFPIKNLAGQVIAFGGRIIADEDQAKYINSSDS 238

Query: 238 PLFQKGSELYGLFEARQAIREAGYALVTEGYMDVVALAQLGFPQAVATLGTACTPIHVQK 297
            +++KG  LYGLF+AR+A+ +   A++TEGYMDV+ L Q G+  A   LGTA TP  V++
Sbjct: 239 AIYKKGEHLYGLFQARRAMTQHKTAMLTEGYMDVLTLHQYGYNMACGVLGTALTPEQVKR 298

Query: 298 LVRQTDQVIFSFDGDNAGRRAARRALEACLPHASDNKTIKFLFLPKEHDPDSYVREMGAP 357
           L      V   FDGDN GR+AA RA E  L   +     K + LP   D DS + + G  
Sbjct: 299 LGGFCSTVELLFDGDNPGRKAAMRACEMLL---TRGMRCKVVLLPDGEDIDSLLHDQGRD 355

Query: 358 AFE---EQIREALPLSQFLLREIIGEND-------LRTPEGRAHAQ---FAAKPLLQALP 404
           AFE   +   + L      LR +    D       L    G  HA     A++ L +   
Sbjct: 356 AFEALRKSAPDGLDFCIDTLRTLYSPGDALEWSRNLLRQAGAGHADGQLLASRFLSRIAS 415

Query: 405 ASALRLQIVRSVAQAT--QSTPAELEVLFELEKPVARVRAAPARSKRTAPVGLERQIMRL 462
              +R + +R        +   A      E   P  + +     +   AP   +R +M  
Sbjct: 416 GLGIREEAIREGLSGDFYKGAAAAAPGAREARNPAPQRQVDAVHTSGDAPAKRDRAVMFF 475

Query: 463 LVAHPQLAADL-DAGA 477
           LV +P   A L +AGA
Sbjct: 476 LVRYPHHFARLHEAGA 491