Pairwise Alignments

Query, 598 a.a., DNA primase from Herbaspirillum seropedicae SmR1

Subject, 574 a.a., DNA primase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  360 bits (924), Expect = e-104
 Identities = 213/524 (40%), Positives = 309/524 (58%), Gaps = 30/524 (5%)

Query: 2   IPQSFIQDLLNRVDIVDVVGRYVQLKKGGANFMGLCPFHNEKSPSFTVSPTKQFYHCFGC 61
           IP+ FI +L+ R DIV+++ R V LKK G N+   CPFH+EKSPSFTVS  KQFYHCFGC
Sbjct: 3   IPRDFINELIARTDIVELIDRKVPLKKAGKNYSACCPFHSEKSPSFTVSRDKQFYHCFGC 62

Query: 62  GAHGTAISFLIEYSGMGFVEAVKDLAQNVGMVVPEREDSIPLAQRQEKQAKSMALSDVMT 121
           GAHG AI F++EY  + FV+A++DLA  +G+ VP  + +     +++    S  L  +M 
Sbjct: 63  GAHGNAIDFVMEYDRLDFVDAIEDLAGQLGLEVPREQGT----GKRQDDGLSRDLYQLME 118

Query: 122 RANDFYRHQLRS---AQPAIAYLKGRGLTGEIAARFGLGYSPDEWDSLRQVFPDYDN--E 176
            A+ F++ QLR     Q  I YL  RGL+ +I   FG+G++PD WD L   +    +  +
Sbjct: 119 EASRFFQTQLRQHQDKQKVIDYLAYRGLSDDIVEHFGIGFAPDGWDGLLSRYRQNQDAQD 178

Query: 177 ALVESGLVIDKSEEGGAHRKRYDRFRGRIMFPIRNTKGQVIGFGGRVMDGGEPKYLNSPE 236
            L+ +G++I  S + G   KRYDRFR R+MFPIR+ +G+VIGFGGRV+  G PKYLNSPE
Sbjct: 179 KLLTAGMLI--SNDSG---KRYDRFRDRLMFPIRDRRGRVIGFGGRVLGDGTPKYLNSPE 233

Query: 237 TPLFQKGSELYGLFEARQAIREAGYALVTEGYMDVVALAQLGFPQAVATLGTACTPIHVQ 296
           TP+F KG+ELYGL+E +Q  R+    L+ EGYMDVVALAQ G   AVA+LGT+ T    Q
Sbjct: 234 TPIFHKGNELYGLYELKQRHRDPDKVLIVEGYMDVVALAQYGVDYAVASLGTSTTAEQFQ 293

Query: 297 KLVRQTDQVIFSFDGDNAGRRAARRALEACLPHASDNKTIKFLFLPKEHDPDSYVREMGA 356
            L+R   +VI  +DGD AG  AA RALE  LP       ++F+FLP+  DPDS VR++G 
Sbjct: 294 LLLRSAKEVICCYDGDRAGNEAAWRALETALPLLKPGDKVRFMFLPQSEDPDSMVRKIGK 353

Query: 357 PAFEEQIREALPLSQFLLREIIGENDLRTPEGRAHAQFAAKPLLQALPASALRLQIVRSV 416
             FE+ +  A+ L +FL   +       T +G    Q  A  L++ +  + L+  ++ ++
Sbjct: 354 DPFEQLMESAITLPEFLFDTL--ATKFGTDKGNLAKQ--AFGLIEKIQDTVLQNLLLENL 409

Query: 417 AQ---ATQSTPAELEVLFELEKPVARVRAAPARSKRTAPVGLERQIMRLLVAHPQLAADL 473
           A       S   + ++ F +++P  +  A+     R  P+   R  + LLV HP+L   L
Sbjct: 410 AHKLGMNSSDDMKKKLGFTVKQP--KPTASTGLKGRGTPL---RLAIALLVQHPELGVGL 464

Query: 474 DAGALEAIARIAPDQAEMLTHLVGVAQGMGEQANFAALVEHLRE 517
                 A+  +     ++L  L+ + +    + N A L+E  R+
Sbjct: 465 --SPQPALNHLQMPGIDLLPLLLALTR--EHRLNSAQLLEQFRD 504