Pairwise Alignments

Query, 598 a.a., DNA primase from Herbaspirillum seropedicae SmR1

Subject, 650 a.a., DNA primase (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  266 bits (679), Expect = 3e-75
 Identities = 178/518 (34%), Positives = 268/518 (51%), Gaps = 35/518 (6%)

Query: 2   IPQSFIQDLLNRVDIVDVVGRYV-----QLKKGGANFMGLCPFHNEKSPSFTVSPTKQFY 56
           +P  F+ +L +RV +  V GR +     + ++G  +    CPFH EK+ SF V   K +Y
Sbjct: 3   LPPGFLDELRSRVSMAQVAGRKLIWDMRKSQQGKGDMWAPCPFHQEKTASFHVDDRKGYY 62

Query: 57  HCFGCGAHGTAISFLIEYSGMGFVEAVKDLAQNVGMVVPEREDSIPLAQRQEKQAKSMAL 116
           +CFGC A G AISF+ E   +GF+EAV+ LA   GM +P R+      Q   K  +   L
Sbjct: 63  YCFGCHAKGDAISFVRETENVGFMEAVEILAAEAGMPMPARDP-----QAAAKADRRTQL 117

Query: 117 SDVMTRANDFYRHQLRSAQPAIA--YLKGRGLTGEIAARFGLGYSPDEWDSLRQVF--PD 172
           S+V  +A  F+R  L++A  A A  YL  RGL+ E  AR+ +G++PD W  L        
Sbjct: 118 SEVAEQAVQFFRLNLKTAAAAEARAYLVRRGLSEEAQARWEIGFAPDGWQHLWDHLRGKG 177

Query: 173 YDNEALVESGLVIDKSEEGGAHRKRYDRFRGRIMFPIRNTKGQVIGFGGRVMDGGE-PKY 231
              + ++++GL     +EGG   + YD FR RIMFPIR+ +G+ I FGGR MD  +  KY
Sbjct: 178 VAEDLILDAGLAKPSRKEGG---RPYDVFRNRIMFPIRDARGRAIAFGGRAMDPEDGAKY 234

Query: 232 LNSPETPLFQKGSELYGLFEARQAIREAGYALVTEGYMDVVALAQLGFPQAVATLGTACT 291
           LNSPET LF K   L+    AR+A  ++   +V EGYMDV+AL++ GF  AVA LGTA T
Sbjct: 235 LNSPETELFDKSRVLFNHARAREAAGKSSPLIVAEGYMDVIALSEAGFAGAVAPLGTAVT 294

Query: 292 PIHVQKLVRQTDQVIFSFDGDNAGRRAARRALEACLPHASDNKTIKFLFLPKEHDPDSYV 351
              ++ L R + + +F+ DGD AG +A +R ++  LP  +  K+++F  LP++ DPD  +
Sbjct: 295 EPQLELLWRISPEPVFALDGDRAGLQAGQRVVDLALPLITAGKSMRFCILPEKQDPDDVI 354

Query: 352 REMGAPAFEEQIREALPLSQFLLREIIGENDLRTPEGRAHAQFAAKPLLQALPASALRLQ 411
           R  GA A    + +A P+ + L +         +PE +A    A +  +  +    ++  
Sbjct: 355 RAGGAEAMATLLDQAKPMVELLWQRETAGKVFDSPERKAALGKALRQAVAKITDPTIKQH 414

Query: 412 IVRSV-----------AQATQSTPAELEVLFELEKPVARVRAAPARSKRTAPVGLERQIM 460
             + V               +S PA        E P    R++   +     +  E  I+
Sbjct: 415 YGQEVKTRLDALFGYGPSKGRSGPAGPWRKRGQEGPTQTTRSSALVTADRDDLLQESVIL 474

Query: 461 RLLVAHPQLAADLDAGAL------EAIARIAPDQAEML 492
             L AHP L A+ ++  L      EA AR+A   A M+
Sbjct: 475 ATLCAHPGLIAEFESDLLDHRFGTEAFARMAARLASMM 512