Pairwise Alignments

Query, 598 a.a., DNA primase from Herbaspirillum seropedicae SmR1

Subject, 574 a.a., DNA primase (RefSeq) from Shewanella sp. ANA-3

 Score =  362 bits (929), Expect = e-104
 Identities = 216/528 (40%), Positives = 309/528 (58%), Gaps = 38/528 (7%)

Query: 2   IPQSFIQDLLNRVDIVDVVGRYVQLKKGGANFMGLCPFHNEKSPSFTVSPTKQFYHCFGC 61
           IP+ FI +L+ R DIV+++ R V LKK G N+   CPFH+EKSPSFTVS  KQFYHCFGC
Sbjct: 3   IPRDFINELIARTDIVELIDRKVPLKKAGKNYSACCPFHSEKSPSFTVSRDKQFYHCFGC 62

Query: 62  GAHGTAISFLIEYSGMGFVEAVKDLAQNVGMVVPEREDSIPLAQRQEKQAKSMALSDVMT 121
           GAHG AI F++EY  + FV+A++DLA  +G+ VP  + +     +++    S  L  +M 
Sbjct: 63  GAHGNAIDFVMEYDRLDFVDAIEDLAGQLGLEVPREQGT----GKRQDDGLSRDLYQLME 118

Query: 122 RANDFYRHQLRS---AQPAIAYLKGRGLTGEIAARFGLGYSPDEWDSLRQVFPDYDN--E 176
            A+ F++ QLR     Q  I YL  RGL+ +I   FG+G++PD WD L   +    +  +
Sbjct: 119 EASRFFQTQLRQHQDKQKVIDYLAYRGLSDDIVEHFGIGFAPDGWDGLLSRYRHSQDAQD 178

Query: 177 ALVESGLVIDKSEEGGAHRKRYDRFRGRIMFPIRNTKGQVIGFGGRVMDGGEPKYLNSPE 236
            L+ +G++I  S + G   KRYDRFR R+MFPIR+ +G+VIGFGGRV+  G PKYLNSPE
Sbjct: 179 KLLTAGMLI--SNDSG---KRYDRFRDRLMFPIRDRRGRVIGFGGRVLGDGTPKYLNSPE 233

Query: 237 TPLFQKGSELYGLFEARQAIREAGYALVTEGYMDVVALAQLGFPQAVATLGTACTPIHVQ 296
           TP+F KG+ELYGL+E +Q  R+    L+ EGYMDVVALAQ G   AVA+LGT+ T    Q
Sbjct: 234 TPIFHKGNELYGLYELKQRHRDPDKVLIVEGYMDVVALAQYGVDYAVASLGTSTTAEQFQ 293

Query: 297 KLVRQTDQVIFSFDGDNAGRRAARRALEACLPHASDNKTIKFLFLPKEHDPDSYVREMGA 356
            L+R   +VI  +DGD AG  AA RALE  LP       ++F+FLP+  DPDS VR++G 
Sbjct: 294 LLLRSAKEVICCYDGDRAGNEAAWRALETALPLLKPGDKVRFMFLPQSEDPDSMVRKIGK 353

Query: 357 PAFEEQIREALPLSQFLLREIIGENDLRTPEGRAHAQFAAKPLLQALPASALRLQIVRSV 416
            AFE+ +  A+ L +FL   +       T +G    Q  A  L++ +  + L+  ++ ++
Sbjct: 354 DAFEQMMESAITLPEFLFDTL--ATKFGTDKGNLAKQ--AFGLIEKIQDTVLQNLLLENL 409

Query: 417 AQATQSTPAELEVLFELEKPVARVRAAPARSKRTAPVGLE------RQIMRLLVAHPQLA 470
           A       ++     +++K   ++  +  ++K TA  GL+      R  + LLV HP+L 
Sbjct: 410 AHKLGMNSSD-----DMKK---KLGFSVKQTKPTASTGLKGRGTPLRLAIALLVQHPELG 461

Query: 471 ADLD-AGALEAIARIAPDQAEMLTHLVGVAQGMGEQANFAALVEHLRE 517
             L    AL  +     D   +L  L         + N A L+E  R+
Sbjct: 462 VGLSPQPALNHLQMPGIDLLPLLLELT-----REHRLNSAQLLEQFRD 504