Pairwise Alignments

Query, 220 a.a., membrane protein from Herbaspirillum seropedicae SmR1

Subject, 213 a.a., conserved hypothetical protein, putative membrane protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  197 bits (501), Expect = 1e-55
 Identities = 94/199 (47%), Positives = 138/199 (69%), Gaps = 3/199 (1%)

Query: 6   LLDVLVHVDKYLGVLIEQYGALIYAVLFLIVFCETGLVVLPFLPGDSLLFIAGTFCATGA 65
           +LD ++H+D+Y+  +++ Y    YA+LF+I+FCETGLVV PFLPGDSLLF+AG   A   
Sbjct: 4   ILDFILHIDQYMINIVQDYHTWAYAILFIIIFCETGLVVTPFLPGDSLLFVAGAISALPG 63

Query: 66  M--DIWLLMTLLVVAAVAGNTLNYWIGGWVGQRVYTH-NYRWLNPEALRKTHAFYEKHGG 122
           M  DI +L+ +L  AAV G++ NY IG + G++++ + N R      L KTH FY+K+GG
Sbjct: 64  MPIDIHILVLILFAAAVLGDSCNYMIGHFFGRKLFHNPNSRIFKQSYLDKTHEFYKKYGG 123

Query: 123 KTIVIARFTPIVRTFAPFIAGVSAMSFARFQLFNVLGAFLWVVGLVVLGYLFGNIPVVQQ 182
           KTI++ARF PIVRTFAPFIAG+  M +  F ++N++G  +WVV     GY FG++P VQ+
Sbjct: 124 KTIILARFVPIVRTFAPFIAGMGKMHYYYFMIYNLIGGAIWVVLFCYAGYFFGDLPFVQE 183

Query: 183 NLNTLVLIGIVAAVFPIVL 201
           NL  L++  I  ++ P ++
Sbjct: 184 NLKLLIIAIIFISILPAII 202