Pairwise Alignments

Query, 283 a.a., type III secretion protein from Herbaspirillum seropedicae SmR1

Subject, 277 a.a., type III secretion apparatus lipoprotein, YscJ/HrcJ family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  124 bits (311), Expect = 2e-33
 Identities = 90/268 (33%), Positives = 132/268 (49%), Gaps = 19/268 (7%)

Query: 5   LLLLATLAACSRMVVLQAALNDADANEIILVLNRKGIEVDK-QKGKDGVTLLVKDVELSR 63
           + LL  L  C     L   LN+  AN ++  L R G+  +K   GK+G  L V+  ++ R
Sbjct: 22  VFLLMLLTGCK--AELYKGLNEEQANTMLATLLRHGVPAEKLAAGKEGYALSVERDQIVR 79

Query: 64  ATETMNAAGLPRRSLSNLGEVFKKQGMISSPMEERIRYIHGLSEELESTMLQFDHVVSAR 123
           A E +    LPR    NLG+VF   GMI+SP EE+ R  + +S+EL  T  + D V++AR
Sbjct: 80  ALEILRENSLPREQYQNLGKVFSGDGMIASPSEEKARLAYAISQELSDTFSRIDGVLTAR 139

Query: 124 VHVVLPERIAPGEPIQPSSAAVFVKYRPPLDEDAVMPRIRRLVASSIPGLASEDGRSKVS 183
           VHVVL       E   P+SAAVF+++ P      ++P+IR L A ++PGL  E    +VS
Sbjct: 140 VHVVLASSETASETRVPASAAVFLRHGPESPVVNLIPKIRELAAKAVPGLDYE----RVS 195

Query: 184 VVMMP-GEPPTPGIEW--TMLGPFTVAVSSAGGLALTMSALLLTTLSSLGYIGLQRALRH 240
           V+++P  E  T  ++   T+ G    + S    L +     LL  L+ L + G +  L  
Sbjct: 196 VMLVPVRETVTVPMQQGATLFGMPLPSESGPSYLLVAAGVTLLAALAGLAFAGARTGL-- 253

Query: 241 PRVARMVAEFAARRIKKAQDKAQAKAQG 268
                    F ARR      +A    QG
Sbjct: 254 -------IAFGARRSASGDARAARGPQG 274