Pairwise Alignments

Query, 283 a.a., type III secretion protein from Herbaspirillum seropedicae SmR1

Subject, 538 a.a., flagellar M-ring protein FliF (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 48.1 bits (113), Expect = 4e-10
 Identities = 52/174 (29%), Positives = 81/174 (46%), Gaps = 10/174 (5%)

Query: 19  VLQAALNDADANEIILVLNRKGIEVDKQKGKDGVTLLVKDVELSRATETMNAAGLPRRSL 78
           VL + L   DAN ++ +L     +V  +   DG T+LV   +L      +  AG      
Sbjct: 52  VLYSNLAGEDANRVVKLLQAN--KVPYKLENDGGTVLVPADKLYDLR--IKVAGEGNLVG 107

Query: 79  SNLG-EVFKKQGMISSPMEERIRYIHGLSEELESTMLQFDHVVSARVHVVLPERIAPGEP 137
             +G E+F    +  +   ++I Y   L  EL  T+ +F  V +ARVH+V+P R    E 
Sbjct: 108 QGIGFEIFDDLKVGQTDFVQKINYQRALQGELIRTISEFPGVETARVHLVIPHRSLFIEE 167

Query: 138 IQPSSAAVFVKYRPPLDEDAV-MPRIRRLVASSIPGLASEDGRSKVSVVMMPGE 190
            Q  SA+V VK R     +A  +  I  LV  ++ G+     R++VSV    G+
Sbjct: 168 QQKPSASVVVKLREGKKMEAQDVQAIVNLVVMAVEGM----DRNRVSVADTSGK 217