Pairwise Alignments

Query, 262 a.a., type III secretion protein from Herbaspirillum seropedicae SmR1

Subject, 278 a.a., type III secretion protein SpaR/YscT/HrcT (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 99.4 bits (246), Expect = 7e-26
 Identities = 66/244 (27%), Positives = 114/244 (46%), Gaps = 5/244 (2%)

Query: 13  LVTMALVTPRVLVCLVILPGFGLNVLTGLAKNTAAMAISLPAALPTFLFVQRTAPDMLTT 72
           L+ +    PR+ +   + P    +V+TG  +     A  LP        + + +   LT 
Sbjct: 23  LLAVVAGMPRLFMVAQVAPFLAGSVVTGQLRMVLVFACYLPVHPVILGQLPKGSVFDLTL 82

Query: 73  ----GVMVFKEAMIGLMFGVLMAIPLWVVQSIGSIFDSQRSPIQIQANNATVDRDASAVG 128
               G +V KE+++GL+ G+L  I  W VQS G + D+QR     + ++       +  G
Sbjct: 83  LGHYGALVLKESLMGLVLGLLAGIAFWTVQSAGFLIDNQRGASMAEESDPMSGEQTTPTG 142

Query: 129 ALLLQAVVLVMVQAGMFAGMARILIESYAVWPAFTLAPPFEPGHFDVL-VKRFGELLWYI 187
           A LLQ ++ +   +G F     +L  SY +WP  +LAP        +L   R   L+ ++
Sbjct: 143 AFLLQTMMYLFYTSGAFLAFLGLLYASYEIWPVPSLAPLAWSIEVPLLFAGRVAWLMSHM 202

Query: 188 VVYGAPVLIPLVLIEFGFAIVGVFASNLQVSFASAPVKSLVGLLIMLLYWSTFSHYVAGD 247
           V+   P+++  +L +    +V  FAS L V   + PVKS V  L+++LY+   +      
Sbjct: 203 VLLAGPLVVACLLADISLGLVNRFASQLNVYVLAMPVKSAVASLLLVLYFGALAAKTPDL 262

Query: 248 FAHL 251
           FA +
Sbjct: 263 FAEI 266