Pairwise Alignments

Query, 360 a.a., type VI secretion protein from Herbaspirillum seropedicae SmR1

Subject, 338 a.a., type VI secretion system baseplate subunit TssG from Vibrio cholerae E7946 ATCC 55056

 Score = 84.3 bits (207), Expect = 4e-21
 Identities = 79/321 (24%), Positives = 137/321 (42%), Gaps = 30/321 (9%)

Query: 23  FQFFQAVRMIELWFKRNGVAPERAVCDFLRFANRTALGFPASEIEAIDAVASSDDTSVAG 82
           + F+Q V +++     N  + E      L F+   +LGF  S++ A++A    DD     
Sbjct: 31  YNFYQLVELLQKLADINPESEEWERDCRLVFSANPSLGFSPSDVMALEA---RDDE---- 83

Query: 83  MAQSLREGKMKYVRLTPTFMGFLGGSGALPAHYTERIARHQIEHRDEGPRAFLDVFSTRS 142
                     ++V LT  F G  G    LP    E++     E      + FLD F+ R 
Sbjct: 84  ----------RWVMLT-NFFGLSGAQSPLPGFILEQLVT---EEPGGYKQPFLDFFNNRL 129

Query: 143 LALFYQAWSKYRLAFQYEMGRRDKFLPLLLSLSGIGFRSLRERLLEVDGRGVRDESIAHF 202
           + L Y+ W KYR   +++ G +D F   L +L G+G   LR          +    +  +
Sbjct: 130 INLVYRVWRKYRYYVRFQPGAQDVFSAQLFALVGLGDPDLRGE------TPINWCKMLAY 183

Query: 203 AAALSHRPASAPYMQQVLSEYFSIP-LTIEQFVGQWYDVPREHQTMLGSTNSALG-TAMA 260
           A  L+ R  S   +  +++  F +P ++I Q+V +   + R  Q  LG  N+ LG   + 
Sbjct: 184 AGTLAGRSRSPQVVAGIIAHCFDLPDVSIRQWVRRRVSIDRSQQLALGKQNARLGMDTVI 243

Query: 261 GQRVWQRDLRMRLRLGPLALPDFEQFLPGARASQALSRMLGVFTGPTLEYEIQLILRAED 320
           G+ V     +  + +  L+   F  FLP  +  Q L +++       + Y+++L +   +
Sbjct: 244 GESVIDCSGKFIICIKRLSRSRFADFLPSGKEYQPLCKLVEFILREQMAYDLELAMDERE 303

Query: 321 VRGLGLSPDRTGGRLGWDSFV 341
              L     R    LGW SF+
Sbjct: 304 A-PLFCLDTRQNIALGWTSFL 323