Pairwise Alignments

Query, 360 a.a., type VI secretion protein from Herbaspirillum seropedicae SmR1

Subject, 311 a.a., type VI secretion system baseplate subunit TssG from Pantoea sp. MT58

 Score =  107 bits (266), Expect = 6e-28
 Identities = 92/322 (28%), Positives = 135/322 (41%), Gaps = 46/322 (14%)

Query: 22  RFQFFQAVRMIELWFKRNGVAPE----RAVCDFLRFANRTALGFPASEIEAIDAVASSDD 77
           R+ FFQ VR++    +R    PE    +++   + F +  +L  PA E+           
Sbjct: 9   RYNFFQQVRLM---LRRLKERPESNGTKSLTSDISFVSPLSLDAPAGEV----------- 54

Query: 78  TSVAGMAQSLREGKMKYVRLTPTFMGFLGGSGALPAHYTERIARHQIEHRDEGPRAFLDV 137
               G      EG  +   L     G  G  GALP  YTE +      + D+  +AF+D+
Sbjct: 55  ----GQIIRTEEGVWQVEVL---MYGMTGALGALPTTYTEWMLERYYRYGDKTAKAFIDI 107

Query: 138 FSTRSLALFYQAWSKYRLAFQYEMGRRDKFLPLLLSLSGIGFRSLRERLLEVDGRGVRDE 197
           F+ R  AL Y AW KY     YE+  +      LL L+G+                +++E
Sbjct: 108 FNNRLHALRYLAWLKYHYYASYELNSQRPLSEALLGLAGV----------MQSAPALQNE 157

Query: 198 SIAHFAAALSHRPASAPYMQQVLSEYFSIPLTIEQFVGQWYDVPREHQTMLGSTNSALGT 257
           +   FA    H   SA  ++  L   FS+P  +  F G W  VP E    LG     LG 
Sbjct: 158 A---FAGLFMHPVRSALNLETWLENLFSVPARVRSFTGGWLKVPSEQCCHLGHVRLTLGQ 214

Query: 258 A-MAGQRVWQRDLRMRLRLGPLALPDFEQFLPGARASQALSRMLGVFTGPTLEYEIQLIL 316
           A M GQ    R     + LGPL L    Q+LPG +    L + +  + GP L + +++I 
Sbjct: 215 APMLGQMRRDRASGFTVELGPLPLSHAPQYLPGGKFYADLLKRIREYVGPGLAFSVEIIT 274

Query: 317 RAEDVRGLGLSPDRTGGRLGWD 338
           +  D  G+       GG LG D
Sbjct: 275 K-HDRHGV------PGGCLGVD 289