Pairwise Alignments

Query, 618 a.a., ATP-dependent DNA helicase RecQ from Herbaspirillum seropedicae SmR1

Subject, 708 a.a., DNA helicase RecQ from Pseudomonas fluorescens SBW25-INTG

 Score =  659 bits (1700), Expect = 0.0
 Identities = 333/596 (55%), Positives = 438/596 (73%), Gaps = 4/596 (0%)

Query: 15  ERALHVLETVFGYSSFRGHQGEIVQHVAGGGDALVLMPTGGGKSLCYQVPALLRQGTGVV 74
           E+A  VL+ +FGY SFRG QG I++ VA GGDALVLMPTGGGKSLC+QVPALLR G  VV
Sbjct: 3   EQAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLRNGLAVV 62

Query: 75  ISPLIALMQDQVDALDEVGVRAAFLNSTQSFDEAMQIERRLRQGDLDLLYVAPERLMTPR 134
           +SPLIALM DQV  L+E+GV AA LNST S ++   +  R+++G++ +LY+APERL+ PR
Sbjct: 63  VSPLIALMDDQVATLEELGVAAASLNSTLSAEQQRDLAARIKRGEVKMLYLAPERLVQPR 122

Query: 135 CLDLLESARISLFAIDEAHCVSQWGHDFRPEYIKLSVLHERFPQVPRIALTATADQQTRE 194
            L  L+S  I+LFAIDEAHCVSQWGHDFR EY++L  L E FP VPRIALTATAD++TRE
Sbjct: 123 MLAFLQSLEIALFAIDEAHCVSQWGHDFRREYLQLGQLAELFPDVPRIALTATADKRTRE 182

Query: 195 EIIHRLQLEDARQFVSSFDRPNIRYQIVEKANGRKQLLDFIKSEHPEDAGIVYCLSRKKV 254
           EI+ RL L++A +F+SSFDRPNI Y+IV K   RKQLL F+ SE   DAGIVYCLSRKKV
Sbjct: 183 EIVERLHLQNAERFLSSFDRPNIFYRIVPKEQPRKQLLAFL-SERRSDAGIVYCLSRKKV 241

Query: 255 EETADFLRSEGINALAYHAGMDYAQRTANQARFLREDKIVMVATIAFGMGIDKPDVRFVC 314
           +E A FL  +G  AL YHAG+    R+A+Q RFL E+ ++MVATIAFGMGIDK +VRFV 
Sbjct: 242 DEVAAFLCEQGYPALPYHAGLPNETRSAHQKRFLNEEGLIMVATIAFGMGIDKSNVRFVA 301

Query: 315 HLDLPKSVEGYYQETGRAGRDGLPADAWMAYGLQDVVQQRRMIDESDADETFKRVLGTKL 374
           H+DLPKS+E YYQETGRAGRDGLPADAWM YGLQDVV  ++M+  S+ DE  KR+   KL
Sbjct: 302 HMDLPKSLEAYYQETGRAGRDGLPADAWMVYGLQDVVMLKQMLQNSEGDERHKRLEQHKL 361

Query: 375 NAMLALCETLHCRRVHLLDYFGE-KSAPCGNCDTCLTPPVSFDATVEVQKLLSTVYRVEQ 433
           +AML+LCE   CRR  LL YF E    PCG+CD C+    ++DAT   ++ LS +YR  Q
Sbjct: 362 DAMLSLCEETRCRRQTLLAYFDEDMPQPCGHCDNCVDGVQTWDATEPARQGLSAIYRTGQ 421

Query: 434 RFAPGHVIEVLRGIDGERVKQWRHDQLSVFGVGSDRGEAEWRAILRQVIALGLLTVDADN 493
           R+  GH+++VL G D E+V+ + H++LSV+GVG  R E EWR++ RQ++A GL+ +D + 
Sbjct: 422 RYGVGHLVDVLLGKDNEKVRSFGHEKLSVYGVGKARAEGEWRSLFRQMVARGLVDIDIEG 481

Query: 494 YSALKLTEAARPVLRGEQAVQLRRYQKPEKAKRSSQRSSFVETDLSTEEQALFEKLRWWR 553
           Y  L+L ++ RP+L+GE +++LRR  KP+   +SS  +S     +  EE+  +E LR  R
Sbjct: 482 YGGLRLNDSCRPLLKGEVSLELRRDLKPQTTAKSS--TSQASQLVRGEEREQWEALRTLR 539

Query: 554 VETARAHNVPAYVIFHDATMREIAKARPQSLDDLRHVTGVGEKKLETYGAQIIALI 609
            + A+ H+VP YVIF D+T+ E+ + +P S+ ++  V+GVG +KLE YG   + ++
Sbjct: 540 RKLAQEHSVPPYVIFPDSTLLEMLREQPTSMAEMARVSGVGARKLERYGQAFLEVL 595