Pairwise Alignments

Query, 402 a.a., hemolysin D from Herbaspirillum seropedicae SmR1

Subject, 385 a.a., Multidrug efflux RND membrane fusion protein MexC from Pseudomonas fluorescens FW300-N1B4

 Score =  358 bits (919), Expect = e-103
 Identities = 196/392 (50%), Positives = 260/392 (66%), Gaps = 17/392 (4%)

Query: 8   TRLTMTVAIAAALVACGQKPAAQGGPMPPSEVSVVTIAPQRVAITNELPGRVEAFRVAQV 67
           T L   VA+A+ L  C ++ AA   P P  +V VVT+ PQ   +T+ELPGR  AFR+A+V
Sbjct: 8   TALVTAVALASLLSGCKKEEAAPAAPTP--QVGVVTLHPQAFTLTSELPGRTSAFRIAEV 65

Query: 68  RARVAGIVQKRVFKEGSEVKEGQVLFKIDPAQYKASLESAQATLARAQANLTQTTLTAQR 127
           R +V GI+ KR+FKEG +VK GQ L++IDP+ Y A+L+SA+A       NL  T   + R
Sbjct: 66  RPQVNGIILKRLFKEGGDVKAGQQLYQIDPSVYDATLKSAEA-------NLRSTKSISDR 118

Query: 128 YKPLVEVNAVSKQEYDNAVAAQKQAEADVAAGKAAVQTASLNLGYATVTSPISGRIGRAL 187
           YK LV+  AVS+QEYD A A + Q+EA       ++Q+A +N+ Y  V +PISGRIGR+ 
Sbjct: 119 YKQLVDEQAVSRQEYDTAQANRLQSEA-------SLQSAQINVRYTKVYAPISGRIGRSS 171

Query: 188 VTEGALVGQGDATQLALVQQLDPVYVNVTQSSADLLKLQQAMAAGQLKSVGDNKASVTLE 247
           VTEGALV  G    +A++QQLDP+YV+VTQSS +LL+L++ + +G+L+  GDN A+V L 
Sbjct: 172 VTEGALVSNGQTDAMAVIQQLDPIYVDVTQSSVELLELRRELESGRLQKAGDNAAAVKLT 231

Query: 248 LENGQAYPLPGKLLFSDISVDENTGSVSLRAEFPNPKRLLLPGTYVRAKIEQAVDEQALL 307
           LE+G  Y L GKL FS++SVD+ TGSV+LRA FPNP   LLPG +V A+++  VD  A+L
Sbjct: 232 LEDGSQYKLDGKLEFSEVSVDQTTGSVTLRAVFPNPDHTLLPGMFVHAQLQAGVDSAAIL 291

Query: 308 VPQQAVVRDAGGS-TVMVVNAENKVEPRPVKTGGARGNNWQVLDGLKEGDRVIVEGLQKV 366
            PQQ V RD  GS T +VV  +NKVE R +K     GN W + DGLK GDRVI EGLQ V
Sbjct: 292 APQQGVTRDLKGSPTALVVGPDNKVELRQLKASRTVGNQWLIEDGLKAGDRVITEGLQFV 351

Query: 367 RPGATVKPVQWNPAGAPAQASGQPAKQEASAQ 398
           RPG  VK  +    GA + A+ Q A   A  +
Sbjct: 352 RPGVEVKATEATNVGAKSPATAQAANTAAGGK 383