Pairwise Alignments

Query, 402 a.a., hemolysin D from Herbaspirillum seropedicae SmR1

Subject, 391 a.a., efflux RND transporter periplasmic adaptor subunit from Rahnella sp. WP5

 Score =  374 bits (959), Expect = e-108
 Identities = 202/372 (54%), Positives = 261/372 (70%), Gaps = 6/372 (1%)

Query: 19  ALVACGQKPAAQGGPMPPSEVSVVTIAPQRVAITNELPGRVEAFRVAQVRARVAGIVQKR 78
           AL  C  K A QG P  P +V VVT+  + + +T ELPGR  AFR+A+VR +V GI+ KR
Sbjct: 21  ALTGCNDKEAQQGAPQAP-QVGVVTLKTEPLNVTTELPGRTAAFRIAEVRPQVNGIILKR 79

Query: 79  VFKEGSEVKEGQVLFKIDPAQYKASLESAQATLARAQANLTQTTLTAQRYKPLVEVNAVS 138
            F EGS++K G  L++IDPA Y+A+ +SA+  L +AQAN   + LT  RYKPL+  + +S
Sbjct: 80  NFVEGSDIKAGTSLYQIDPATYQAAYDSAKGDLVKAQANAQISRLTVTRYKPLLGTSYIS 139

Query: 139 KQEYDNAVAAQKQAEADVAAGKAAVQTASLNLGYATVTSPISGRIGRALVTEGALVGQGD 198
           KQ+YD AVA   QA+A V + KAAV++A +NL Y  VTSPISGRIG++ VTEGALV  G 
Sbjct: 140 KQDYDTAVATAAQADAAVVSAKAAVESARINLAYTKVTSPISGRIGKSSVTEGALVSNGQ 199

Query: 199 ATQLALVQQLDPVYVNVTQSSADLLKLQQAMAAGQLKSVGDNKASVTLELENGQAYPLPG 258
           AT LA VQQLDP+YV+VTQSS D L+L+Q +A G LK   D KA V L ++NG+ Y  PG
Sbjct: 200 ATALATVQQLDPIYVDVTQSSNDFLRLKQELADGSLKQ-ADGKAQVKLLMDNGKEYSQPG 258

Query: 259 KLLFSDISVDENTGSVSLRAEFPNPKRLLLPGTYVRAKIEQAVDEQALLVPQQAVVRD-A 317
            L FSD++VDE TGS++LRA FPNP   LLPG +VRA++++ V+  ALLVPQQ + R+  
Sbjct: 259 TLEFSDVTVDETTGSITLRAIFPNPNDSLLPGMFVRARLDEGVNNNALLVPQQGITRNPR 318

Query: 318 GGSTVMVVNAENKVEPRPVKTGGARGNNWQVLDGLKEGDRVIVEGLQKVRPG--ATVKPV 375
           G +T MV+ A+NKVE R V T  A G+ W V DGLK GD+VIV GLQK++PG   T + V
Sbjct: 319 GDATAMVIGADNKVELRTVTTTQAIGDKWVVTDGLKSGDKVIVTGLQKIKPGVQVTAQEV 378

Query: 376 QWNPAGAPAQAS 387
             N A APA A+
Sbjct: 379 DQN-AAAPATAT 389