Pairwise Alignments

Query, 402 a.a., hemolysin D from Herbaspirillum seropedicae SmR1

Subject, 381 a.a., efflux RND transporter periplasmic adaptor subunit from Pseudomonas fluorescens SBW25-INTG

 Score =  353 bits (907), Expect = e-102
 Identities = 200/388 (51%), Positives = 265/388 (68%), Gaps = 22/388 (5%)

Query: 8   TRLTMTVAIAAALVACGQKPAAQGGPMPPSEVSVVTIAPQRVAITNELPGRVEAFRVAQV 67
           T L   VA+A+ L  C ++ AA     P  +V VVTI PQ   +T+ELPGR  A+R+A+V
Sbjct: 8   TALVTAVALASLLSGCKKEEAAPPAQTP--QVGVVTIQPQAFTLTSELPGRTTAYRIAEV 65

Query: 68  RARVAGIVQKRVFKEGSEVKEGQVLFKIDPAQYKASLESAQATLARAQANLTQTTLTAQR 127
           R +V GI+ KR+FKEG++VKEGQ L++IDP+ Y+A+L+SAQA+L       TQT   + R
Sbjct: 66  RPQVNGIILKRLFKEGADVKEGQQLYQIDPSVYEATLKSAQASL-------TQTKSISDR 118

Query: 128 YKPLVEVNAVSKQEYDNAVAAQKQAEADVAAGKAAVQTASLNLGYATVTSPISGRIGRAL 187
           YK LV+  AVS+QEYD AVA +  AEA+V       QTA +N+ Y  V +PISGRIGR+ 
Sbjct: 119 YKQLVDEQAVSRQEYDTAVANRMTAEANV-------QTAQINVRYTKVFAPISGRIGRSS 171

Query: 188 VTEGALVGQGDATQLALVQQLDPVYVNVTQSSADLLKLQQAMAAGQLKSVGDNKASVTLE 247
           VTEGALV  G A  +A++QQLDP+YV+VTQSSA++LKL++ + +GQL+  G N A V L 
Sbjct: 172 VTEGALVSNGQADSMAVIQQLDPIYVDVTQSSAEMLKLRRDLESGQLEKAGANAAKVKLT 231

Query: 248 LENGQAYPLPGKLLFSDISVDENTGSVSLRAEFPNPKRLLLPGTYVRAKIEQAVDEQALL 307
           LE+G  Y   GKL FS++SVD+ TGSV+LRA FPNP   LLPG +V A+++  V+ +A+L
Sbjct: 232 LEDGSDYGQDGKLEFSEVSVDQTTGSVTLRAVFPNPDHTLLPGMFVHAQLQAGVNSKAIL 291

Query: 308 VPQQAVVRDAGGS-TVMVVNAENKVEPRPVKTGGARGNNWQVLDGLKEGDRVIVEGLQKV 366
            PQQ V RD  G+ T ++VNA+NKVE R +      G  W V  GL  GDRVI EGLQ V
Sbjct: 292 APQQGVTRDLKGTPTALIVNADNKVEQRELVANRTAGAYWLVEKGLNAGDRVITEGLQYV 351

Query: 367 RPGATVKPVQWN---PAG--APAQASGQ 389
           +PGA VK  + +   PAG  APA A+G+
Sbjct: 352 KPGAEVKVKEADNAKPAGTAAPAAAAGK 379