Pairwise Alignments

Query, 1071 a.a., transporter from Herbaspirillum seropedicae SmR1

Subject, 1047 a.a., RND multidrug efflux transporter MexF (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 1301 bits (3368), Expect = 0.0
 Identities = 663/1042 (63%), Positives = 818/1042 (78%), Gaps = 4/1042 (0%)

Query: 3    ISKFFIDRPIFAGVLSVLLLLGGVLAMLQLPISEYPEVVPPSVVVRAQYPGANPKVIAET 62
            +S+FFI RPIFA VLS+L  + G +A+ QLPI+EYPEVVPP+VVV A YPGANPKVIAET
Sbjct: 2    LSQFFIKRPIFAAVLSLLFFITGAIAVWQLPITEYPEVVPPTVVVTANYPGANPKVIAET 61

Query: 63   VASPLEEQINGVENMLYMQSQANSDGNLTITVNFRLGVDPDKAQQLVQNRVSQALPRLPE 122
            VASPLE++INGVE+MLYM SQA SDG +T+T+ F +G D D+AQ  VQ+RV +A+PRLP+
Sbjct: 62   VASPLEQEINGVEDMLYMSSQATSDGRMTLTITFAIGTDVDRAQTQVQSRVDRAMPRLPQ 121

Query: 123  DVQRLGVTTLKSSPTLTMVVHLTSPDNRYDTTYLRNYAVLNVKDRLARIQGVGEVGLFGS 182
            +VQRLG+ T KSSP LTMVVHL SPDNRYD  YL NYA LNVKD LARI+GVG V LFG+
Sbjct: 122  EVQRLGIVTEKSSPDLTMVVHLLSPDNRYDMLYLSNYAALNVKDELARIKGVGAVRLFGA 181

Query: 183  GNYAMRVWLDPNKVAQRGLTATDVVRAIREQNVQVAAGVIGASPSSPETPLQLSVNAQGR 242
            G Y++R+WLDPNKV+  G++ +D++ A+REQN Q AAG +GA PS      QL +N +GR
Sbjct: 182  GEYSLRIWLDPNKVSALGMSPSDIIAAVREQNQQAAAGSLGAQPSG-NADFQLLINVKGR 240

Query: 243  LKTEGEFRDIILKASPDGATTRLGDVARVELAASEYGLRSLLDNKPAVAIPIFQAPGANA 302
            L    EF DII+K   +G   RL DVARVEL A  Y LRSLLDNK AVAIP+FQA G+NA
Sbjct: 241  LTELSEFEDIIIKVGQNGEVIRLKDVARVELGAISYALRSLLDNKDAVAIPVFQASGSNA 300

Query: 303  LDVSTQVRAAMKELSADFPSSVSYSIVYDPTQFVRASIEAVVHTLLEAIALVVIVVIIFL 362
            + +S  VRA M  L+  FP  + Y IVYDPT FVR SIEAVV TLLEA+ LVV+VV++FL
Sbjct: 301  IQISDDVRAEMARLAKSFPEGLQYEIVYDPTVFVRGSIEAVVKTLLEAVLLVVLVVVLFL 360

Query: 363  QTWRASIIPLLAVPVSIIGTFSLMLGFGYTINALSLFGMVLAIGIVVDDAIVVVENVERN 422
            QTWRASIIPL+AVPVS++GTF+ M   G+++NALSLFG+VLAIGIVVDDAIVVVENVERN
Sbjct: 361  QTWRASIIPLVAVPVSLVGTFAFMHLMGFSLNALSLFGLVLAIGIVVDDAIVVVENVERN 420

Query: 423  IGAGLSPRDATYRAMQEVSGPIIAIALTLVAVFVPLAFMTGLTGQFYKQFAMTIAISTVI 482
            I +GLSP  AT +AM+EV+GPI+A  L L AVF+P AFM+GLTGQFYKQFA+TI IST I
Sbjct: 421  IASGLSPIAATQKAMKEVTGPIVATTLVLAAVFIPTAFMSGLTGQFYKQFALTITISTFI 480

Query: 483  SAFNSLTLSPALAALLLKGHGDKPDWLTRQMDRFLGGF-FIRFNRFFNRASDNYGHGVTG 541
            SA NSLTLSPAL+ALLLKGH    D LTR MD+  GG+ F  FNR FNRAS+ YG+ V  
Sbjct: 481  SAINSLTLSPALSALLLKGHDAPKDALTRLMDKLFGGWLFTPFNRLFNRASEGYGYLVRK 540

Query: 542  VIKRKGATMGVYVLLLAATLGISYI-VPGGFVPGQDKQYLVAFAQLPNGASIDRSEEVMR 600
            VI R G  +G+  L + A  G+ ++  P G+VPGQDKQYLVAFAQLP+ AS++R++ V++
Sbjct: 541  VI-RFGGIIGLVYLGMVALTGVQFVNTPTGYVPGQDKQYLVAFAQLPDAASLERTDVVIK 599

Query: 601  KMSDIMLKEPGVASAIAFPGLSINGFTNSSSAGIVFVGLKPFEERKSKDLSGNAIAASLN 660
            KMSDI L  PGVA +IAFPGLSINGFTNS ++G+VFV L  FE RKS +LS NAIA  LN
Sbjct: 600  KMSDIALNHPGVAHSIAFPGLSINGFTNSPNSGVVFVALDDFELRKSPELSANAIAGQLN 659

Query: 661  KKFGSIKEAFTAVFPPPPVMGLGTLGGFKMQIEDRDALGYAELDKAAQAFMKAAAKEPAL 720
            ++F  I++AF A+FPPPPV GLGT+GGF++QI+DR  LGY  L +  Q  M  A  +P L
Sbjct: 660  QQFAGIQDAFIAIFPPPPVQGLGTIGGFRLQIQDRANLGYEALYQVTQQVMYKAWADPQL 719

Query: 721  GPMFSSYQINVPQLDVELDRVKAKQLGIPVTDVFNTMQIYLGSLYVNDFNRFGRVYQVRA 780
              +FSSYQ+NVPQL++++DR KAKQ  + +  +F T+Q Y+GS YVNDFNRFGR YQV  
Sbjct: 720  AGIFSSYQVNVPQLELDIDRTKAKQQAVSLDQIFQTLQTYMGSTYVNDFNRFGRTYQVNM 779

Query: 781  QADAPFRAKAEDIAQLKTRNDAGEMVPLSSVVKVKQTFGPEMVVRYNGYTAADINGGPAP 840
            QAD  FR   + I+QLK  N  G+M+PL S + V Q+ GP+ V+ YNG+T A+INGGPAP
Sbjct: 780  QADEAFRQSPQQISQLKVPNVNGDMIPLGSFINVSQSAGPDRVMHYNGFTTAEINGGPAP 839

Query: 841  GYSSDQAQAAAERVAAATLPRGIKFEWTDLTYQKILAGNAGVWVFPISVLLVFLVLAALY 900
            G SS QAQAA E++ A TLP G+ +EWT+LTYQ+ILAGN G+ VFP+ ++LVF+VLAA Y
Sbjct: 840  GVSSGQAQAAIEKILAETLPIGMTYEWTELTYQQILAGNTGLLVFPLVIVLVFMVLAAQY 899

Query: 901  ESLTLPLAVILIVPMSILAALTGVWLTRGDNNIFTQIGLMVLVGLSAKNAILIVEFAREL 960
            ESL+LPLA+ILI+PM++L+AL+GV L  GDNNIFTQIGL+VLVGL+ KNAILIVEFA+E 
Sbjct: 900  ESLSLPLAIILIIPMTLLSALSGVLLYGGDNNIFTQIGLIVLVGLATKNAILIVEFAKEK 959

Query: 961  EMQGRTAVQAAIEASRLRLRPILMTSIAFIMGVVPLVTSSGAGSEMRHAMGIAVFFGMLG 1020
            +  G   +++ +EA+RLRLRPILMTSIAFIMGVVP+V S+GAG+EMR AMG+AVF GM+G
Sbjct: 960  QDHGMEVMESILEAARLRLRPILMTSIAFIMGVVPMVFSTGAGAEMRQAMGVAVFAGMIG 1019

Query: 1021 VTLFGLFLTPVFYVLLRTIDRR 1042
            VT+FGL LTP+FY  L    RR
Sbjct: 1020 VTIFGLILTPLFYYSLVKRGRR 1041