Pairwise Alignments

Query, 311 a.a., sugar ABC transporter permease from Herbaspirillum seropedicae SmR1

Subject, 305 a.a., ABC-type sugar transport systems, permease components from Pseudomonas stutzeri RCH2

 Score =  124 bits (311), Expect = 3e-33
 Identities = 81/276 (29%), Positives = 146/276 (52%), Gaps = 6/276 (2%)

Query: 42  LAPACVMTLVYVLYPILYTIYLSFFSWDGMTEPRFVGLANYVELFHAPTFYTALKNNVLW 101
           LAP+ ++ LV     I +T  LSF +   M   ++VGL  Y  L+    ++ A +N +++
Sbjct: 28  LAPSMLIVLVGFYAYIGWTFLLSFTNSRFMPSYKWVGLQQYERLWDNDRWWVASQNLLVF 87

Query: 102 LLMFL-LAPPMGLAIALYLNQKVIGMRVVKSLFFAPFVLSGVVVGLMYSWFYDPSFGLLS 160
             +F+ ++  +G+ +A+ L+Q++    ++++++  P  LS +V G  + W  +P  GL  
Sbjct: 88  GGLFIAVSLIIGVVLAVLLDQRIRREGLIRTIYLYPMALSMIVTGTAWQWLLNPGLGLDK 147

Query: 161 LLFGQG-----VPVLGDARYATFGIIFAALWPQTAYCMILFLTGLTALNHDQVEAARMEG 215
           LL   G        L D     + ++ AA+W  + + M LFL GL +++   + AA+++G
Sbjct: 148 LLRDWGWEGFRFDWLVDPDRVIYCLVIAAVWQASGFVMALFLAGLRSVDQSIIRAAQVDG 207

Query: 216 AKGWTMLRYVILPQLRSTTFMAFVVSIIGALRSFDLISVMTSGGPYESSTVLAYYAYDQA 275
           A   T+   ++LP LR   F A ++    A++SFDL++ MT+GGP  SS + A + Y   
Sbjct: 208 ASLPTIYLRIVLPSLRPVFFSALMILAHIAIKSFDLVAAMTAGGPGYSSDLPAMFMYAHT 267

Query: 276 IKYYRQGYSAAVAVTLFAIMLVYIVYQLRRMLRAER 311
               + G  AA A+ +   ++  IV  L   LR +R
Sbjct: 268 FTRGQMGLGAASAMLMLGAVMAIIVPYLYSELRNKR 303