Pairwise Alignments

Query, 147 a.a., DNA polymerase III subunit chi from Escherichia coli Nissle 1917

Subject, 153 a.a., DNA polymerase III chi subunit, HolC (RefSeq) from Shewanella loihica PV-4

 Score =  111 bits (277), Expect = 6e-30
 Identities = 59/149 (39%), Positives = 84/149 (56%), Gaps = 6/149 (4%)

Query: 1   MKNATFYLLDN-DTTVDGLSAVEQ-----LVCEIAAERWRSGKRVLIACEDEKQAYRLDE 54
           M NA FYL+    +    ++  EQ       C +A + +R  + V I C D++QAY +DE
Sbjct: 1   MPNALFYLMPQASSAATNVAKAEQESVYLFACRLAEQAYRGQQLVYIHCNDQQQAYEVDE 60

Query: 55  ALWARPAESFVPHNLAGEGPRGGAPVEIAWPQKRSSSPRDILISLRTCFADFATAFTEVV 114
            LW     +FVPHNL GEGP GGAPVEI + +   +  R +LI+L      FA  F +++
Sbjct: 61  ILWQFEPSAFVPHNLKGEGPTGGAPVEIGFDKLGPNKNRHLLINLADQAPQFAVNFGQII 120

Query: 115 DFVPYEDSLKQLARERYKAYRVAGFNLNT 143
           DFV  + ++K  AR+RY+ YR  G  L T
Sbjct: 121 DFVANDAAMKATARDRYRQYRELGIPLTT 149