Pairwise Alignments

Query, 346 a.a., permease from Escherichia coli Nissle 1917

Subject, 331 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 70.9 bits (172), Expect = 4e-17
 Identities = 65/291 (22%), Positives = 129/291 (44%), Gaps = 22/291 (7%)

Query: 68  DYAMIYFLAVWKAAVLGVILGSLIQVLIPRDWLLRTLGQSRFRGTLLGTLFSLPGMMCTC 127
           D + I+ L +    V+ ++  SL  V   RD+L    G+++  G LLG++F      C+C
Sbjct: 35  DVSKIFVLLLVMIYVIALLRASL-DVERVRDYLA---GKNKGVGYLLGSIFGAITPFCSC 90

Query: 128 CAAPVAAGMRRQQVSMGGALAFWMGNPLLNPATLVFMGFVLGWGFAAIRLVAGLVM---- 183
            + PV  G     + +G  +AF + +PL+N   ++ +  +LGW F  + +  G+ +    
Sbjct: 91  SSIPVFLGFTSAGIPLGITIAFLITSPLINEVAVLLLMSLLGWKFTLLYVAVGMTVGMLG 150

Query: 184 -VLLIATLVQKWVRETP-----QTQAPVEIDIPESQGGFFS-----RWGRALWTLFWSTI 232
            VLL A   ++W++        + +     D+  +     S     ++ +A     +  +
Sbjct: 151 GVLLDAMKAERWLQSFAAEALLRGRQMAASDVVSTVARVLSLSERHQFAKAEAIEIFGRV 210

Query: 233 PVYILAVLVLGAARVWLFPHA--DGAVDNSLMWVVAMAV-AGCLFVIPTAAEIPIVQTMM 289
             +++  + LGAA     P    +  +     W V +AV  G          IP++++++
Sbjct: 211 WKWVIIGVGLGAALHGFVPEGWIEAHLGQGQWWSVPVAVLIGIPLYSNATGIIPVMESLL 270

Query: 290 LAGMGTAPALALLMTLPAVSLPSLIMLRKAFPAKALWLTGAMVAVSGVIVG 340
             G+     LA  M+  A S P  I+L++    + L L   ++  +  +VG
Sbjct: 271 ANGLPIGTTLAFCMSTVAASFPEFILLKQVMQWRLLALLLVVLLTAFTLVG 321



 Score = 53.1 bits (126), Expect = 1e-11
 Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 7/157 (4%)

Query: 39  GKAFTAAETHSIGKSILAQADANPWQAALDYAMIYFLAVWKAAVLGVILGSLIQVLIPRD 98
           G+   A++  S    +L+ ++ +  Q A   A+  F  VWK  ++GV LG+ +   +P  
Sbjct: 174 GRQMAASDVVSTVARVLSLSERH--QFAKAEAIEIFGRVWKWVIIGVGLGAALHGFVPEG 231

Query: 99  WLLRTLGQSRFRGTLLGTLFSLPGMMCTCCAAPVAAGMRRQQVSMGGALAFWMGNPLLNP 158
           W+   LGQ ++    +  L  +P         PV   +    + +G  LAF M     + 
Sbjct: 232 WIEAHLGQGQWWSVPVAVLIGIPLYSNATGIIPVMESLLANGLPIGTTLAFCMSTVAASF 291

Query: 159 ATLVFMGFVLGWGFAAIRLVAGLVMVLLIATLVQKWV 195
              + +  V+ W     RL+A L++VLL A  +  W+
Sbjct: 292 PEFILLKQVMQW-----RLLALLLVVLLTAFTLVGWM 323