Pairwise Alignments

Query, 327 a.a., TRAP transporter substrate-binding protein from Escherichia coli Nissle 1917

Subject, 334 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Acidovorax sp. GW101-3H11

 Score =  151 bits (382), Expect = 2e-41
 Identities = 98/318 (30%), Positives = 158/318 (49%), Gaps = 9/318 (2%)

Query: 1   MKALRPLTASLMLLTSCLLISNTTLAKTTLKLSHNQDKSHAVHKALSYLADKTKEYSNGE 60
           MK L+ L A+ ++  S L  ++    + T+K +    K H   +     AD     + G 
Sbjct: 1   MKLLKTLLATALVAASLLPAAHAQ--ERTIKFAFQNQKDHPQAQGAQKFADLVAAKTGGR 58

Query: 61  LVIRIYPNATLGNERESLELMNSGALQMVKVNAASLESFAPDYSLFSLPFLFRDRDHYYR 120
           + ++++P  TLG + +++  +  G ++M  +NA  L + + ++ ++  PFLF        
Sbjct: 59  IAVKLFPGGTLGGDLQTVSALQGGTVEMTVLNAGILAAQSKEFGIYDFPFLFATPQEADA 118

Query: 121 VLQSDLGKKILNSSESKGFVGITYYDGGARSFY-SNKPITKPEDLAGMKIRVQQSPSAIA 179
           V     GKK+L+  ++K  VG+ Y++ G R+   S KPITK ED+AG+KIRV QSP  I 
Sbjct: 119 VTDGPFGKKLLDKLQAKNLVGLGYWELGFRNLTNSKKPITKAEDIAGLKIRVIQSPIYID 178

Query: 180 MMKALGGVATPMAQGELYTALQQGVVDGGENNTVVYADMRHAEVAKVYSRDEHTMVPDVL 239
           +  ALG  A PM   ELYTA++Q  VDG EN        + AEV K  +   H   P  +
Sbjct: 179 LFNALGANAVPMPFPELYTAMEQKAVDGQENPFSTILSSKFAEVQKYLTVTRHMYNPQAV 238

Query: 240 IISTDVLNKLGDKERTALLKAADESMMQMKDVIWPAAEKEAYD-KMKGMNA---TVVDVD 295
           I+S    + L   ++ AL  A  E+    + V    A     D K  GM     +  ++D
Sbjct: 239 IVSKKFWDSLNPADQKALTDAMAEATTFQRGVSRVQANVALEDLKKAGMQVSEFSPAELD 298

Query: 296 KSAFKERVKPLYDEFKAK 313
           K   + +VKP+ ++   K
Sbjct: 299 K--LRAKVKPVVEKHSEK 314