Pairwise Alignments

Query, 304 a.a., NAD-dependent epimerase/dehydratase family protein from Escherichia coli Nissle 1917

Subject, 327 a.a., NADH dehydrogenase (ubiquinone) (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 75.1 bits (183), Expect = 2e-18
 Identities = 82/311 (26%), Positives = 136/311 (43%), Gaps = 32/311 (10%)

Query: 1   MNQTVAVTGATGFIGKYIIDNLLARGFHVRALTRTARAHVNDNLTWVRGSLE-------D 53
           M++ V + G +GF+G+YI   +   G+ VR   R     +        G +E       D
Sbjct: 1   MSKLVTIFGGSGFVGRYIARRMAQEGWRVRVAVRRPNEALFVRTYGAVGQVEPILSNIRD 60

Query: 54  THSLSELVAGASAVVHCAGQVRGHKEEIFTRCNVDGSLRLMQAAKESGFCQRFLFISSLA 113
             S+   V GA  V++C G +    +  F      G+ R+ + + E+G   RF+ IS++ 
Sbjct: 61  DASVQAAVTGADVVINCVGILSETGKNTFGLVQSHGAARVARLSAEAG-VGRFVQISAIG 119

Query: 114 ARHPELSWYANSKHVAEQR-LTAMADEITLGVFRPTAVYGPGDKELKPLFDWMLRG-LLP 171
           A     S YA +K   EQ  L AM + +   + RP+ V+GP D+           G +LP
Sbjct: 120 ADPAAKSDYARTKAEGEQAVLQAMPEAV---ILRPSIVFGPEDQFFNRFASMSRLGPILP 176

Query: 172 RLGTPETLLSFLHVTDFAQAVGQWLSAETVQTQTYELCDGVAGGYDWQRVQQLVADVRCG 231
            +G  ET    ++V D A+A  +  +    +   YEL     GG D    ++L+A +   
Sbjct: 177 VVGA-ETKFQPVYVDDVARAAVK-AALGQAKPGIYEL-----GGPDVNSFRELMAHMLSV 229

Query: 232 SVR---MVGIPLPLLTCLA---DISTALSRLAGKEPMLTRSKIRELTHADWSASNNRISE 285
             R   +V +P P+   +    D+   LS       MLT  ++R L      A +N ++ 
Sbjct: 230 IDRRRLIVNVPFPVAHVMGMTLDLVQKLSLGIIHNGMLTHDQVRNL------AKDNVVAA 283

Query: 286 DINWFPGISLE 296
           D   F  + +E
Sbjct: 284 DAMGFDDLGIE 294