Pairwise Alignments

Query, 270 a.a., tRNA pseudouridine(38-40) synthase TruA from Escherichia coli Nissle 1917

Subject, 257 a.a., tRNA pseudouridine synthase A (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  156 bits (394), Expect = 5e-43
 Identities = 96/250 (38%), Positives = 134/250 (53%), Gaps = 7/250 (2%)

Query: 11  KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70
           + AL IEYDG+ + GWQRQ E  SVQ  +E AL  +  +   +  AGRTDAGVH  GQV 
Sbjct: 3   RFALKIEYDGAPFAGWQRQREQPSVQGAVEAALRGLQPDHAGIAAAGRTDAGVHALGQVA 62

Query: 71  HFETTAQRKDAAWTLGVNANL-PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLRP 129
           H +          +  +NA+L P  +AV     V +DFHARFSA  R Y + +   R  P
Sbjct: 63  HVDLARDWDPFRLSEALNAHLRPAPVAVLAAARVGEDFHARFSALERSYLFRLLVRR-AP 121

Query: 130 AVLSKG-VTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH-- 186
           A    G V     PLD E M   A+ L+G++DFT+FR+  CQ+ +P + +  I +     
Sbjct: 122 ATHDAGLVWRVMNPLDVEAMREGAKYLIGKHDFTTFRSTMCQAASPVKTLDEITIEESPR 181

Query: 187 --GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEG 244
             G      ++A +F+H+ VR+IVG+L  VGA     + +   L A+DR         +G
Sbjct: 182 DAGTEFRFHLRARSFLHNQVRSIVGTLERVGAGAWDPADVKTALEARDRAACGPVCAPQG 241

Query: 245 LYLVAVDYPD 254
           LYL AV YP+
Sbjct: 242 LYLRAVRYPE 251