Pairwise Alignments

Query, 879 a.a., YdbH family protein from Escherichia coli Nissle 1917

Subject, 1086 a.a., conserved domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 63.5 bits (153), Expect = 6e-14
 Identities = 51/183 (27%), Positives = 85/183 (46%), Gaps = 10/183 (5%)

Query: 689  TDVSV----DVLGGNVLMKQLRMPQHDP--ALLRLNNLSSSELVSAVNPKQFAMSGAFSG 742
            TDVS+    +VL G  L+    +   D   A L L  +   E++          +G F G
Sbjct: 906  TDVSMTAKGNVLSGQFLLPDFNLKLQDKSHAYLLLQGMDLEEVLRIQPQIGIYANGLFDG 965

Query: 743  ALPLWLNNEKWIVKDGWLANSGPMTLRL--DKDTADAVVKDNMTAGSAINWLRYMEISRS 800
             LP+ L + K  +  G LA   P  L         D + +         + L ++  S+ 
Sbjct: 966  VLPVDLVDGKVSISGGQLAARAPGGLIAISGNPAVDQMRQSQPYLDFVFSALEHLAYSQL 1025

Query: 801  STKINLDNLGLLTMQANITGTSRVDGKSGTVNLNYHHEENIFTLWRSLRFGDNLQAWLEQ 860
            S+  ++DN G  T+   + G S+  G    ++LNY HEEN+  L+RSL+ G++LQ  +E+
Sbjct: 1026 SSSFDMDNTGDATLLVEVKGRSQ--GIERPIHLNYSHEENMLQLFRSLQIGNDLQNRIEK 1083

Query: 861  NAR 863
            + +
Sbjct: 1084 SVK 1086