Pairwise Alignments

Query, 430 a.a., ABC transporter substrate-binding protein from Escherichia coli Nissle 1917

Subject, 434 a.a., extracellular solute-binding protein family 1 (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  112 bits (281), Expect = 2e-29
 Identities = 103/430 (23%), Positives = 176/430 (40%), Gaps = 41/430 (9%)

Query: 30  SIEFMHSSVEQERQAVISKLIARFEKENPGITVKQVPVEEDAYNTKVITLSRSGSLPEVI 89
           +I F  +  + ER A   ++ A+FE E  G  V+ +PV E    T+      +G LP+VI
Sbjct: 12  TIRFWTTEEQPERLAKQQEMAAQFEAET-GTAVEVIPVTESDLGTRATAAFAAGDLPDVI 70

Query: 90  ETSHDYAKVMDKEQLIDRQAVATVISNVGEGAFYDGVLRIVRTEDGSAWTGVPVSAWIGG 149
             +  YA    +  ++D  A   V+ ++GE  F  G L++  T DG A   VPV  W   
Sbjct: 71  YHTLQYALPWAEAGILDTDAATEVVEDLGEDTFAPGALQMASTGDGVA--SVPVDGWTQM 128

Query: 150 IWYRKDVLAKAGLEEPKNWQQLLDVAQKLNDPANKKYGIALPTAESVLTEQSFSQFALSN 209
           I YRKD   + GLE P ++  +    + L++P      +A    +     Q      L+N
Sbjct: 129 IVYRKDKFEEMGLEPPTSFANVTAALEALHNPPEMYGFVAATKVDENFMSQVLEHVFLAN 188

Query: 210 QANVFNAEGKITLDTPEMMQALTYYRNLAANTMPGSNDIMEVKDAFMNGTAPMAIYSTYI 269
             +  + +G   LD     + L +YR +A  + PG     + ++ +  G A M I+S +I
Sbjct: 189 GVSPVDDDGFAPLDEAATTEVLEFYRAIAEASPPGELYWKQSRELYFAGQAAMIIWSPFI 248

Query: 270 LP--AVIKEGDPKNV-----------------GFVVPTEKNSAVYGMLTSLTITAGQKAE 310
           L   A +++  P  +                  F  P+    A +G +    IT      
Sbjct: 249 LDELAGLRDSAPPTINDDPTSAELASLTGIVTNFSGPSNPEGAAWGDIRYFGITTD---A 305

Query: 311 ETEAAEKFVTFMEQADNIADWVMMSPGAALPVNKAVVT-----TATWKD----NDVIKAL 361
           +T+AA +FV F    +     + ++P    PV K         T  W       D    L
Sbjct: 306 DTDAAMEFVKF-SMDEGYTQTLSIAPEGKFPVRKGTAEDPQKFTEAWSQLPVGVDRKAPL 364

Query: 362 GEL-----PNQLISELPNIQVFGAVGDKNFTRMGDVTGSGVVSSMVHNVTVGKADLPGTL 416
           G+L      ++++  L   Q +G V +   +    +  S  ++ +V     G+ D    +
Sbjct: 365 GDLYDAAMIDEIVGGLDVAQRWG-VAEGQLSLASKMINSQAINRIVRQYIDGEVDAAAAV 423

Query: 417 QASQKKLDEL 426
            A    L ++
Sbjct: 424 AAMNDALSQI 433