Pairwise Alignments

Query, 633 a.a., peptidoglycan DD-transpeptidase MrdA from Escherichia coli Nissle 1917

Subject, 618 a.a., penicillin-binding protein 2 (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  629 bits (1622), Expect = 0.0
 Identities = 308/616 (50%), Positives = 428/616 (69%), Gaps = 9/616 (1%)

Query: 2   KLQNSFRDYTAESALFVRRALVAFLGILLLTGVLIANLYNLQIVRFTDYQTRSNENRIKL 61
           K + +  D+ AE++LF RRAL  F  ++ L  +L+ NLY+LQ+  + DY TRSN+NRI++
Sbjct: 4   KKRITMHDHAAEASLFKRRALFTFFCVVALLSMLVTNLYHLQVESYKDYATRSNDNRIRV 63

Query: 62  VPIAPSRGIIYDRNGIPLALNRTIYQIEMMPEKVDNVQQTLDALRSVVDLTDDDIAAFRK 121
           VPIAPSRG+IYDRNG+ LA N+  Y ++++PEK+ N+ +TLD L  +++++ D+   F +
Sbjct: 64  VPIAPSRGLIYDRNGVLLAENQPFYSLDLVPEKIANMSETLDELGKLIEISPDERENFTE 123

Query: 122 ERARSHRFTSIPVKTNLTEVQVARFAVNQYRFPGVEVKGYKRRYYPYGSALTHVIGYVSK 181
                 RF  + +K  LTE QVA F+VNQ+RFPG+ V+   +R YPY S LTHV+GYV K
Sbjct: 124 ALKFHRRFKPLTLKNQLTEEQVAIFSVNQHRFPGITVEAGLKRNYPYVSQLTHVLGYVGK 183

Query: 182 INDKDVERLNNDGKLANYAATHDIGKLGIERYYEDVLHGQTGYEEVEVNNRGRVIRQLKE 241
           IN +D  +L  + +  NYAAT DIGK GIE++YE +LHG  G+ E EVNNRGR IR LK 
Sbjct: 184 INTRDRAQLERNDQWKNYAATKDIGKQGIEKFYESLLHGTPGHLEEEVNNRGRTIRTLKI 243

Query: 242 VPPQAGHDIYLTLDLKLQQYIETLLAGSRAAVVVTDPRTGGVLALVSTPSYDPNLFVDGI 301
           VPP+ G DIYLTLDL+LQQ    LL G + ++V  DPR GG+LALVS+PSYDPN FV GI
Sbjct: 244 VPPEPGQDIYLTLDLQLQQKAVELLQGHKGSIVAIDPRDGGILALVSSPSYDPNQFVQGI 303

Query: 302 SSKDYSALLNDPNTPLVNRATQGVYPPASTVKPYVAVSALSAGVITRNTTLFDPGWWQLP 361
           + KDYS LLND + PL+NRATQG Y PASTVKP +A+  L    +T +T ++DPG+WQ+P
Sbjct: 304 NRKDYSDLLNDKSRPLINRATQGQYAPASTVKPIIALLGLDEKAVTEHTRIWDPGFWQIP 363

Query: 362 GSEKRYRDWKKWGHGRLNVTRSLEESADTFFYQVAYDMGIDRLSEWMGKFGYGHYTGIDL 421
           G E++YRDWK+WGHG +NV  ++ ES DT+FY++AY +G+D ++ +M +FG+G  TG+D+
Sbjct: 364 GVERKYRDWKRWGHGWVNVYSAIVESCDTYFYELAYKIGVDPIARFMEQFGFGQNTGVDI 423

Query: 422 AEERSGNMPTREWKQKRFKKPWYQGDTIPVGIGQGYWTATPIQMSKALMILINDGIVKVP 481
            EE +GNMP++EWK+ ++ + WY GDTI VGIGQGYWTATP+Q++ A  IL N+G    P
Sbjct: 424 FEESTGNMPSKEWKRLKYNQAWYIGDTISVGIGQGYWTATPLQLASATAILANNGRRFPP 483

Query: 482 HLLMSTAEDGKQVPWVQPHEPPVGDIHSGYWELAKDGMYGVANRPNGTAHK-YFASAPYK 540
           HLL S  ++  ++       PP+   +   W++  + M         TAHK  F  A Y 
Sbjct: 484 HLLKSIKDNTAKIDSPINELPPIELKNPRNWKIINEAM-------RQTAHKSRFTDASYT 536

Query: 541 IAAKSGTAQVFGLKANETYNAHKIAERLRDHKLMTAFAPYNNPQVAVAMILENGGAGPA- 599
            A K+GTAQV G+  N  Y+A+KIAE  RD+ L+ A+AP+ NP++ +A+++EN G G A 
Sbjct: 537 AAMKTGTAQVIGVAENTKYDANKIAEHFRDNALVVAYAPFENPKIVLAVVMENAGWGGAN 596

Query: 600 VGTLMRQILDHIMLGD 615
            G + R +LD  ML D
Sbjct: 597 AGPVARAMLDEYMLRD 612