Pairwise Alignments

Query, 259 a.a., RNA polymerase sigma factor FliA from Dyella japonica UNC79MFTsu3.2

Subject, 244 a.a., RNA polymerase sigma factor, FliA/WhiG family from Pseudomonas stutzeri RCH2

 Score =  130 bits (327), Expect = 3e-35
 Identities = 79/216 (36%), Positives = 125/216 (57%), Gaps = 10/216 (4%)

Query: 16  EEMVRRHAPLVRRIAYHLMGRLPPSVDVDDLVQAGMIGLLEAARNYATDRMASFETYAGI 75
           +  + ++ PLV+RI   L  +    +D +D+ Q GMIGLLE  R Y  +    F  +A +
Sbjct: 26  QRWLMQYLPLVKRIVRQLSLQANQVLDREDMEQIGMIGLLEGLRRYG-EPDEQFGRFAAL 84

Query: 76  RIRGAMLDELRKTDWTPRSVHRKLREVSEVVRQIENETGADATDAEVIRRLGIDAQEYHQ 135
           RIRGA+LDELR+ DW PR V ++  +V + +R++  + G   +D E+    G+D ++Y  
Sbjct: 85  RIRGAILDELRRQDWRPRQVRQQAHKVRDAIRELTRQLGHSPSDEEIKTFTGLDEKDYQA 144

Query: 136 ILADAASARLLSLSAPEDDEDGAALDVADQEGLGPQDRFEQEGMRGALVE-AIGGLPERE 194
            L   +S  + SL     DE    L    +      + FE+  ++  L+E A+  L ERE
Sbjct: 145 FLWADSSEAIESL-----DE---LLQSGHEHFPDTAELFEERLLKERLLEQALSRLDERE 196

Query: 195 QLVMSLYYEQELNLKEIGAVLGVTESRVCQIHGQAL 230
           +LV++LYY+ EL+LKEI  VL V+++RVCQ+  QA+
Sbjct: 197 RLVLTLYYQHELSLKEIALVLEVSDARVCQLSKQAI 232