Pairwise Alignments

Query, 259 a.a., RNA polymerase sigma factor FliA from Dyella japonica UNC79MFTsu3.2

Subject, 241 a.a., RNA polymerase sigma factor, FliA/WhiG family from Pseudomonas stutzeri RCH2

 Score =  241 bits (615), Expect = 1e-68
 Identities = 129/231 (55%), Positives = 159/231 (68%), Gaps = 1/231 (0%)

Query: 12  RESTEEMVRRHAPLVRRIAYHLMGRLPPSVDVDDLVQAGMIGLLEAARNYATDRMASFET 71
           +++   ++ ++APLV+RIAYHL+ RLP SV VDDL+QAGMIGLLEAA+ Y   + ASFET
Sbjct: 9   KDAQYRLIDQYAPLVKRIAYHLLARLPASVQVDDLIQAGMIGLLEAAKKYDAGKGASFET 68

Query: 72  YAGIRIRGAMLDELRKTDWTPRSVHRKLREVSEVVRQIENETGADATDAEVIRRLGIDAQ 131
           YAGIRIRG MLDE+RK DW PRSVHR  R VSE +R IE +TG DA D EV   L +   
Sbjct: 69  YAGIRIRGTMLDEVRKGDWAPRSVHRNSRMVSEAIRTIEAKTGRDAKDHEVAAELKLSLD 128

Query: 132 EYHQILADAASARLLSL-SAPEDDEDGAALDVADQEGLGPQDRFEQEGMRGALVEAIGGL 190
           EY+ IL D   +RL S     ++ E G   + A      P    E E  + ALV+AI  L
Sbjct: 129 EYYGILGDTLGSRLFSFDDLLQEGEHGELQEDAASLHPEPFRDLEDERFQQALVDAIANL 188

Query: 191 PEREQLVMSLYYEQELNLKEIGAVLGVTESRVCQIHGQALIRLRARMTGWR 241
           PERE+LV+SLYY++ELNLKEIG VLGV+ESRV Q+H Q   RLRAR+  WR
Sbjct: 189 PEREKLVLSLYYDEELNLKEIGQVLGVSESRVSQLHSQCAARLRARLGEWR 239