Pairwise Alignments

Query, 259 a.a., RNA polymerase sigma factor FliA from Dyella japonica UNC79MFTsu3.2

Subject, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

 Score =  226 bits (575), Expect = 4e-64
 Identities = 120/243 (49%), Positives = 168/243 (69%), Gaps = 6/243 (2%)

Query: 1   MSVASEYLQLQRESTEEM-VRRHAPLVRRIAYHLMGRLPPSVDVDDLVQAGMIGLLEAAR 59
           M+ A  Y Q    +++++ + +++ LV+RIA+HL+GRLPPSV ++DL+QAGM+GLLEA +
Sbjct: 1   MNKALTYDQYGNLNSQQLFLEKYSVLVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQK 60

Query: 60  NYATDRMASFETYAGIRIRGAMLDELRKTDWTPRSVHRKLREVSEVVRQIENETGADATD 119
           NY   + ASFETYAGIRIRGAMLD++R+ DW PRSVH+  RE+S+ +  +E E   D TD
Sbjct: 61  NYDGSKGASFETYAGIRIRGAMLDDIRRGDWVPRSVHKHNREISQAIAVLEGELNRDPTD 120

Query: 120 AEVIRRLGIDAQEYHQILADAASARLLSLSAPED--DEDGAALDVADQEGLGPQDRFEQE 177
           AEV + L +  ++YH +L D   +R++ +   ED    D A     + E   P     +E
Sbjct: 121 AEVAKFLNMSLEQYHSVLMDINCSRIVGI---EDLGVSDDAISPFEEGEDNSPFHGVAEE 177

Query: 178 GMRGALVEAIGGLPEREQLVMSLYYEQELNLKEIGAVLGVTESRVCQIHGQALIRLRARM 237
             R ALVE+I  LPERE LV+SLYY++ELNLKEIG VLGV+ESRV QI  Q++ RLR ++
Sbjct: 178 SFRKALVESIKSLPEREALVLSLYYDEELNLKEIGEVLGVSESRVSQILSQSMQRLRTKL 237

Query: 238 TGW 240
           + W
Sbjct: 238 SSW 240