Pairwise Alignments

Query, 259 a.a., RNA polymerase sigma factor FliA from Dyella japonica UNC79MFTsu3.2

Subject, 247 a.a., flagellar biosynthesis sigma factor FliA from Marinobacter adhaerens HP15

 Score =  247 bits (631), Expect = 1e-70
 Identities = 125/237 (52%), Positives = 167/237 (70%), Gaps = 2/237 (0%)

Query: 7   YLQLQRESTEEMVRRHAPLVRRIAYHLMGRLPPSVDVDDLVQAGMIGLLEAARNYATDRM 66
           Y Q   +   +++ +HAPLV++IA HLM RLP SV ++DL+QAGMIGLLEAA+ Y++ + 
Sbjct: 10  YNQSSAQKPAQLIEQHAPLVKKIALHLMARLPASVQLEDLMQAGMIGLLEAAQRYSSTKG 69

Query: 67  ASFETYAGIRIRGAMLDELRKTDWTPRSVHRKLREVSEVVRQIENETGADATDAEVIRRL 126
           A+FETYAGIRIRGAM+DE+RK DW PRSVHR  R +S+ ++ +E+  G +A D EV   L
Sbjct: 70  ATFETYAGIRIRGAMVDEIRKGDWVPRSVHRNARRISQAIKAVEDRLGREAHDQEVAEEL 129

Query: 127 GIDAQEYHQILADAASARLLSLSAPEDDEDGAALDVADQEGLGPQDRFEQEGMRGALVEA 186
           G+   EYH  L+D+ S RL SL   E +E G       +    P +    +  R +L EA
Sbjct: 130 GMGLPEYHSYLSDSNSGRLFSLD--ELNESGELPIEQTETQDNPLEGLSSDAFRRSLAEA 187

Query: 187 IGGLPEREQLVMSLYYEQELNLKEIGAVLGVTESRVCQIHGQALIRLRARMTGWREQ 243
           I  LPERE+LV+SLYY++ELNLKEIGAVLGV+ESRV QIH QA +RLR R++ WR++
Sbjct: 188 IEDLPEREKLVLSLYYQEELNLKEIGAVLGVSESRVSQIHSQAALRLRGRLSDWRQE 244