Pairwise Alignments

Query, 1299 a.a., transporter substrate-binding domain-containing protein from Dyella japonica UNC79MFTsu3.2

Subject, 1141 a.a., response regulator/sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  325 bits (834), Expect = 1e-92
 Identities = 205/665 (30%), Positives = 343/665 (51%), Gaps = 37/665 (5%)

Query: 638  VKAAGGVRW--VSTSATPSLVDGAVHFSGCWVDMTEQHQQAEQ-------LAKAKELAES 688
            V  + G+ W  + T+  P  +   +   G  +   +  Q+  +       LA AKE AE 
Sbjct: 498  VNYSEGISWHTLITTLLPIAIGLLLFIGGLTIAYLKLRQEINKRRIVENALAIAKENAEL 557

Query: 689  ATQAKTEFLATMSHEIRTPMNGVIGMLELLGHTPLSEDQRRMLGTVETSAVALLQILDDV 748
            AT+ K EFLA MSHEIRTPMNG++GM E L  TPL  +Q++M+  +   A  +LQI++++
Sbjct: 558  ATKRKAEFLAAMSHEIRTPMNGLVGMAEQLSFTPLGIEQKQMVQIISNGAEEILQIINNI 617

Query: 749  LDFSKMEAGRLTIEYVPVDVRDLVDSTVSVLSAQAHRKGLALAVEIDERLAAEVSAENVR 808
            LDFSK++ G++ +E  P+ +R+++DST++++      K L+L + +D+ +AA V+ +++R
Sbjct: 618  LDFSKIDMGKMRLESTPILLREVLDSTLNMVMNDLRTKDLSLYLHVDQGVAARVTGDSLR 677

Query: 809  LRQIMLNLLSNAIKFTVLGAVRVCVRVLEDGGASQKVRFSVIDTGIGMSPDQVYRLFQPF 868
            ++QI+ N +SNAIKFT  G + V V++  +    Q +   V DTGIGM+ D   R+F  F
Sbjct: 678  IKQILFNWVSNAIKFTERGFIEVSVKLEAEEEGQQLLLIGVQDTGIGMNADTQARIFNIF 737

Query: 869  TQAESSTTRRYGGTGLGLYICRRLVELMGGTIAVESEVNMGTGMHVELNMPIHRRELSHH 928
             QA+ STTR YGG GLGL I   L E+MGG I + S  ++GT + + + +P+  ++    
Sbjct: 738  EQADVSTTRSYGGAGLGLAISHTLAEMMGGDIILNSAPHLGTFIGLRIRLPVVAQDEFDE 797

Query: 929  ALRGRTVRIEVADAAVAQALQRYVLALGMAVEENGSGEGPELRFVDEQFGASRPAQATGC 988
             L+G    I ++D  +   L  ++ +LG+ + +N +    +L F D    AS   Q   C
Sbjct: 798  QLQGLQAYIAISDIKLRHTLSWHLASLGIVLTQNKA--NADLLFTD---NASDDRQHILC 852

Query: 989  IAVTAIPDPHGYSSSTAGITITSNPLKWSTFAIACQHALGL--AVGETEREVLPDLATGT 1046
               T   +  GY        +  NPL        C   +G    +  T +  +       
Sbjct: 853  ---THFNEALGYRYQNDQCLLNVNPLTSQAVKDVCYINMGWIDTIVSTPQRDITLKVNWP 909

Query: 1047 EGRVLVAEDNPINQALIAAQLDKLGYACDVVANGKEALEALERRDYGLLITDCHMPLMDG 1106
            E ++L+ ED+ +NQ L+  QL +L   CD+  +G +AL+ +++  Y L++ DC MP+MDG
Sbjct: 910  ECKILLIEDHQLNQILVQRQLKQLRLDCDIAEHGVQALDLMQQTHYDLILCDCRMPVMDG 969

Query: 1107 YELARAVRRRENHSGRHQRVLAMTANAMPGELERCTSAGMDDFLPKPVRIPELRAKLERL 1166
            Y   + VR +E   G+H  ++A+TAN +  + +RC +  MDD L KP+ + EL   L + 
Sbjct: 970  YTFTQQVRAQE-IDGQHVPIIALTANVLNEQKQRCAAVEMDDLLAKPLHLNELHEMLLKW 1028

Query: 1167 FGTAAGAADDAADTPALAFDVNLSTLRETFGEDRIIHTLITGFVRTTRADLLTLDTLMEE 1226
                          PAL   +++  L   FG    +  ++  F     + L  +     +
Sbjct: 1029 L---------PHSKPAL---IDIKILENAFGRREALSKMLLMFKDELESSLKDIQLTAPQ 1076

Query: 1227 RRPLDMAHWVHRLLGGLQLFGSNPLTEEGQALEQALRSEGRYEVLADTLAFRRRVEVYLE 1286
                 +A  +HR  G + + G   + E+   LE+ +R E       +   FR  +   + 
Sbjct: 1077 -----LADNIHRTAGTISMLGLTSIAEQAWLLEEKIRQEDSNNGEVELTEFRAIIIQLIS 1131

Query: 1287 RLEAV 1291
             L A+
Sbjct: 1132 ELNAI 1136



 Score =  225 bits (574), Expect = 2e-62
 Identities = 157/521 (30%), Positives = 259/521 (49%), Gaps = 12/521 (2%)

Query: 40  VVVGAYQEGFAPFESVVHERVQGMAPDYLAKLADSLGIRITYRVFPDWPALLNAARAGSI 99
           + VG    G+ PF+ V  +   G + + +  LA +L  +I ++++PDW +L +A   G +
Sbjct: 37  ISVGVLANGWGPFQQVNDQITTGFSVELIQLLAKNLHYQIDWKIYPDWMSLYSAGCNGEV 96

Query: 100 DLLMDISPTAERSAYLHFSQPYFEDFPTLVTRIDGGRVQDMAGLRDATLVSLAGDATAET 159
           D+L+D   T ER+  L FS+ Y+     +V R D    +D++    A +    G +T + 
Sbjct: 97  DVLLDAFRTTERTQCLMFSRSYYTSPTVVVIRYDSRFFRDVSEFGQARIAVEKGFSTEKL 156

Query: 160 ARKYIPGVKLIHARSTREALRMVADGRAEAYIENPYAQRAAIDAAGLQNRLGIGPPVALP 219
            + + P V  +   +T +AL  V D   +AYI N +     I A      L I     L 
Sbjct: 157 VKLHYPTVTEVTFSNTEQALSSVIDKTTDAYIGNLHVANQYISA---HPELLIVAQAPLM 213

Query: 220 ISALCLAAPLDRLPLIGALDKALALLTNEDHARLRAPWLN-GDLRHARSDDSAVPLSEDE 278
           +  L L    +   L+  LD AL  L+ E+   L   WL  GDL       S   L  +E
Sbjct: 214 MENLHLGITKNNSLLVTQLDNALMALSVEERNALEVTWLGMGDLHFL--GHSNFLLRPNE 271

Query: 279 RAWLRQLPPLRITVDPTSPPYTLLDRHGQPAGISSDYLREVAKALDLRLTFVPVRNWSEV 338
           R WL  LP LR+       P++ ++ +G   G+ +DYL +  + L L       R W+E+
Sbjct: 272 REWLAGLPSLRVGFVDDWMPFSSVNNNGILVGLIADYLEQFREKLGLDYAAQKTRTWNEI 331

Query: 339 VRGIAEDRIDLTPAVSPVSPEHAQLMDF--SVAYLDYPVMIVTRTEANAITGPYDMNGWT 396
              +    IDL  A+ P   + AQ  D+  S  +  +P++I T   +  I G  ++N   
Sbjct: 332 QSALINHEIDL--AIIPTRLK-AQYPDWHMSEVFTSFPIVIATARNSPRIAGLSELNFQR 388

Query: 397 VAANLSRQDIKAITARMRGVNVVGVASTEEGLGKVADGSVNAFVGDIANADFVIRERFPG 456
           V        + +I      ++VV  A+ +EGL  VA G+  A++G++A    +I  +F  
Sbjct: 389 VVIT-DNLLLPSIKKAYPNIDVVVSANPDEGLTLVAKGNAAAYMGNLAVVAMLIDNKFID 447

Query: 457 RLKINAPTEDHVVLAMGVAKRYAPLVPLINRVLVNMPDRKQQAIRNTWLAAHYTYGGTWK 516
            L++ APT     LA+ + + Y  L+PLINRV  +M ++++Q IRNTWLA +Y+ G +W 
Sbjct: 448 ELRVAAPTPYKDELAVAIREPYWQLIPLINRVFSSMSEKEKQQIRNTWLAVNYSEGISWH 507

Query: 517 EIARKTLPVIAIVLLFLLTVSYAYVRLRRETSRRRRTEEQL 557
            +    LP+   +LLF+  ++ AY++LR+E ++RR  E  L
Sbjct: 508 TLITTLLPIAIGLLLFIGGLTIAYLKLRQEINKRRIVENAL 548