Pairwise Alignments

Query, 542 a.a., nitrogenase molybdenum-iron protein alpha chain (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 487 a.a., nitrogenase iron-molybdenum cofactor biosynthesis protein NifE from Rhodopseudomonas palustris CGA009

 Score =  214 bits (546), Expect = 5e-60
 Identities = 134/475 (28%), Positives = 238/475 (50%), Gaps = 67/475 (14%)

Query: 64  GCCYAGCKGVVIGPYGDMVHIVHGPVGCSFYAWLTRRNQFRARGEAGKNYLSYCFTTDMQ 123
           GC + G K + + P  D+ H+VHGP+ C   +W  R  +      +G       FTTDM 
Sbjct: 44  GCAFDGAK-IALQPIVDVAHLVHGPIACEGSSWDNRGTK-----SSGSKLYRTGFTTDMG 97

Query: 124 DEDIIFGGEKKLAQAIREAAAIFRPEAISVHATCPVGLIGDDIQAVARELSKETGIPVMA 183
           + D+IFGGEK+L ++IRE    + P A+ V+ TC   ++GDDI AV +  S++ G P + 
Sbjct: 98  ENDVIFGGEKRLFRSIREIIEKYDPPAVFVYQTCVPAMMGDDIVAVCKVASEKFGKPCVP 157

Query: 184 FNCEGYKGVSQSAGHHIANNKIFDMALGTRERE-AGRFSVNVLGEYNIGGDAYEIERVLE 242
               G+ G  ++ G+ +A   + D  +GT+E E    + +N++GEYN+ G+ ++++ +L+
Sbjct: 158 IISPGFVG-PKNLGNKLAGEAMLDYVIGTQEPEFTTPYDINIIGEYNVAGELWQVKPLLD 216

Query: 243 KCGIEVVATFSGNSVYEDMCTAHSANLNLVMCHRSINYLAEMMETKFGIPWMKVNFIGMR 302
           + GI +++  SG++ Y ++  +H A   +++C  ++  +A  ME ++GIP+ + +F G+ 
Sbjct: 217 ELGIRILSCLSGDARYHEVAQSHRARAAMMVCSTAMINVARKMEERYGIPYFEGSFYGIS 276

Query: 303 SMSQSLRKIARYF----DDAALTARIESVIAEEEARAETALAAYMPGLEGKTAMLFVGGS 358
             S+SLR+IAR          L AR E++IA EEA+A  A+ AY P LEGK  +L  GG 
Sbjct: 277 DTSESLRQIARLLIARGAPDELMARTEALIAREEAKAWAAIKAYTPRLEGKKVLLITGGV 336

Query: 359 RAHHYMHLMRDLGMEPLVAGFEFAHRDDYEGRRVIPTIRVDADSKNIEELKVTADPERYR 418
           ++   +  +++ G+  +    + + ++D         +R+   S ++ +           
Sbjct: 337 KSWSVVAALQEAGLSIVGTSVKKSTKED--------KLRLKEMSPDVHQ----------- 377

Query: 419 PRLDPAYREQLEREGLLSSYEGMWDDMGEGTLVIDDVSHVEIEKLIHRMNPDIICSGIKD 478
                                            IDD+   E+ K++     DI+ SG + 
Sbjct: 378 ---------------------------------IDDLRPREMYKMLKDAQADIMLSGGRS 404

Query: 479 KYVIEKFGVPCKQLHNYDYSGPYAGYEGAVNFARDVYAMIHSPAWKLTRS--PFD 531
           ++V  K  +P   + N + +  Y GY G V   R +   + +P W   RS  P+D
Sbjct: 405 QFVALKARMPWMDI-NQERTYAYCGYVGIVEMVRQIDKSLSNPIWAQVRSAPPWD 458