Pairwise Alignments

Query, 542 a.a., nitrogenase molybdenum-iron protein alpha chain (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 459 a.a., nitrogenase iron-molybdenum cofactor biosynthesis protein NifE from Herbaspirillum seropedicae SmR1

 Score =  225 bits (573), Expect = 3e-63
 Identities = 136/471 (28%), Positives = 241/471 (51%), Gaps = 64/471 (13%)

Query: 64  GCCYAGCKGVVIGPYGDMVHIVHGPVGCSFYAWLTRRNQFRARGEAGKNYLSYCFTTDMQ 123
           GC + G K + + P  D+ H+VHGP+ C   +W  R         +G       FTTD+ 
Sbjct: 44  GCAFDGAK-IALQPIVDVAHLVHGPIACEGNSWDNRH-----AASSGVQTYRTGFTTDIN 97

Query: 124 DEDIIFGGEKKLAQAIREAAAIFRPEAISVHATCPVGLIGDDIQAVARELSKETGIPVMA 183
           + D+I+GGEK+L +A++E    + P A+ V+ TC   L GDDI+AV +  S + G PV+ 
Sbjct: 98  ELDVIYGGEKRLYKAVKEIIEKYDPPAVFVYQTCVTALTGDDIEAVCKAASAKFGKPVIP 157

Query: 184 FNCEGYKGVSQSAGHHIANNKIFDMALGTRERE-AGRFSVNVLGEYNIGGDAYEIERVLE 242
            N  G+ GV ++ G+ +A   + D  +GT E E    + +N++GEYN+ G+ ++I  +L+
Sbjct: 158 VNSPGFAGV-KNLGNKLAGEALLDYVIGTVEPEFTTPYDINIIGEYNLSGELWQITPLLD 216

Query: 243 KCGIEVVATFSGNSVYEDMCTAHSANLNLVMCHRSINYLAEMMETKFGIPWMKVNFIGMR 302
             G+ V++  SG+  Y ++ ++H A  ++++C +++  +A  ME ++GIP+ + +F G+ 
Sbjct: 217 AMGVRVLSCISGDGRYREIASSHRARASMMVCSKAMINVARKMEERYGIPFFEGSFYGIG 276

Query: 303 SMSQSLRKIARYF----DDAALTARIESVIAEEEARAETALAAYMPGLEGKTAMLFVGGS 358
            +S SLR+IAR        A L  R E++IA EEARA + LA Y   L GK  +L  GG 
Sbjct: 277 DVSDSLRQIARLLVQQGAPAELMDRTEALIAVEEARAWSRLAHYKKRLAGKRVLLITGGV 336

Query: 359 RAHHYMHLMRDLGMEPLVAGFEFAHRDDYEGRRVIPTIRVDADSKNIEELKVTADPERYR 418
           ++   +  ++++G+E +    + + R+D E                I+E+          
Sbjct: 337 KSWSVVAALQEVGIEIVGTSVKKSTREDKE---------------RIKEI---------- 371

Query: 419 PRLDPAYREQLEREGLLSSYEGMWDDMGEGTLVIDDVSHVEIEKLIHRMNPDIICSGIKD 478
                                     MG+   +IDD++  E+  ++     DI+ SG + 
Sbjct: 372 --------------------------MGDEAHMIDDMTPREMYAMLKEARADIMLSGGRS 405

Query: 479 KYVIEKFGVPCKQLHNYDYSGPYAGYEGAVNFARDVYAMIHSPAWKLTRSP 529
           +++  K  +P   + N +    YAGYEG +    ++   +++P W+  R+P
Sbjct: 406 QFIALKAKMPWLDI-NQERHHAYAGYEGMITLVSEIDRALYNPVWEQVRAP 455