Pairwise Alignments

Query, 476 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 477 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  317 bits (813), Expect = 4e-91
 Identities = 191/495 (38%), Positives = 272/495 (54%), Gaps = 46/495 (9%)

Query: 4   LLIVEDNEDVRRQLRWGLAKEPYDLHLAGSVDEALALQREHAPAVVTLDLGLPPDAEGAS 63
           +LIV+D+   R  LR  L    Y    A   + A+A  R+ A   V +D+ +        
Sbjct: 6   ILIVDDDAAHRSMLRTMLRGWGYATEEADDGESAVAKVRQRAWDAVLMDVRM-----ARM 60

Query: 64  EGFRGLAALLDHDPRTKVIVVTGHHDMENALRAIEGGAYDFCQKPADLEMLKVIISRAFF 123
           +G   L  +LD +P T V+++T    ++ A+ A+  GAYD+  KP D ++L+  + RA  
Sbjct: 61  DGIAALRHILDWNPATPVLIMTAFSSVDTAVEALRTGAYDYLIKPLDFDVLRHTLERA-- 118

Query: 124 LHGLQGGGAMASASGMASASGGASAPDAVSGAGAGGGKPDDGWQGIVGRCPSMRAVFETV 183
           L   +            S+ GGA AP A                GI+GR   M  + E +
Sbjct: 119 LDHTRLASENRELRERLSSQGGAGAPGAS--------------HGIIGRSAPMHELVEMI 164

Query: 184 AKVAVTGAPVLVTGESGTGKELVARAIHALGPRCTRTFVAINCGAIPDNLLEAEFFGYEK 243
           A VA + A VL+TGESGTGKELVARA+HA   R  +  V +NC A+ + LLE+E FG+E+
Sbjct: 165 ATVAPSEATVLITGESGTGKELVARALHAASHRSAKPLVTVNCAALTETLLESELFGHER 224

Query: 244 GAFTGATQRVQGKVEYADGGTLFLDEIGELPANLQVKLLRFLQEKVIQRVGGRKDIAVDA 303
           GAFTGA +R +G+   ADGGTLFLDEIGE+P  LQ KLLR LQ+  +QRVG    + VD 
Sbjct: 225 GAFTGADRRREGRFVQADGGTLFLDEIGEMPLTLQAKLLRALQQGEVQRVGSDTPLTVDV 284

Query: 304 RIVAATNRDIQTEIASGRFREDLYYRIGVVPVALPPLRARGDDILLLARHFLESSAGEGT 363
           R++AATNRD++ E A+GRFREDLYYR+ V+ V +P LR R  D+ LLA  FL+    +  
Sbjct: 285 RVIAATNRDLREEAAAGRFREDLYYRLNVIAVHVPALRERAGDVPLLAAFFLDRYTEKNR 344

Query: 364 GNIVGFSPAAEQAMLRYAWPGNVRELENKVRRAVIFASGRRIMPDDL------------- 410
            ++ GF+P A   +LR+ WPGNVRELEN + RAVI A+G  +   +L             
Sbjct: 345 KHLKGFTPQAMDMLLRHDWPGNVRELENAIERAVILATGDYVTERELPLHFGGGGSGIAG 404

Query: 411 ----------GFDETPAKAAAPRPEGSLREARNALERDMVLSALDKCGGNIVQASLAIGV 460
                     G    PA      P   L  +   LER  +++ L +   N  +A+  +G+
Sbjct: 405 SGGSAGTGEAGAGNAPADGDGLAPYAGL--SLEDLERRAIIATLRETADNKSEAARRLGI 462

Query: 461 SRPTFYDLLRKHGIE 475
           +R T ++ L+K+ +E
Sbjct: 463 TRATLHNKLKKYDLE 477