Pairwise Alignments

Query, 476 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 486 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  315 bits (806), Expect = 3e-90
 Identities = 193/502 (38%), Positives = 278/502 (55%), Gaps = 51/502 (10%)

Query: 1   MPGLLIVEDNEDVRRQLRWGLAKEPYDLHLAGSVDEALALQREHAPAVVTLDLGLPPDAE 60
           M  +LIV+D   +R+  +  LA E +D+  A + ++ + L RE  P +V +D+ +P    
Sbjct: 1   MAKILIVDDELQLRQSFQRLLAGEGHDVRAASTGEQGIKLVREELPELVIMDVRMP---- 56

Query: 61  GASEGFRGLAALLDHDPRTKVIVVTGHHDMENALRAIEGGAYDFCQKPADLEMLKVIISR 120
              +G   L A+ + D R  V+++T +   E A+ A + GA+D+  KP ++  +  +I +
Sbjct: 57  -GMDGLTALRAIREIDARLPVVIMTAYSTTETAIEATKLGAFDYILKPFEIPDILALIEQ 115

Query: 121 AFFLHGLQGGGAMASASGMASASGGASAPDAVSGAGAGGGKPDDGWQGIVGRCPSMRAVF 180
           A     ++ G  M +              D V+    G G+   G + +VG   +M  V+
Sbjct: 116 A-----VEAGRRMRARV------------DMVADGDDGTGQETLG-EALVGTSRAMHQVY 157

Query: 181 ETVAKVAVTGAPVLVTGESGTGKELVARAIHALGPRCTRTFVAINCGAIPDNLLEAEFFG 240
           + + + A T A VLV GESGTGKELVARA++    R  + F+ INC AIPD LLE+E FG
Sbjct: 158 KAIGRAAPTDALVLVRGESGTGKELVARAVYQHSLRGEKPFLIINCVAIPDTLLESELFG 217

Query: 241 YEKGAFTGATQRVQGKVEYADGGTLFLDEIGELPANLQVKLLRFLQEKVIQRVGGRKDIA 300
           YEKGAFTGAT R  GK+E A+GGT+FLDEIG++P  +Q KLLR LQEK I+R+GGR+ I 
Sbjct: 218 YEKGAFTGATNRRVGKIEQANGGTVFLDEIGDMPLGIQAKLLRLLQEKQIERLGGRQPIP 277

Query: 301 VDARIVAATNRDIQTEIASGRFREDLYYRIGVVPVALPPLRARGDDILLLARHFLESSAG 360
           VD RI+AATN D++  +A GRFREDLYYR+ VV + LPPLR R +DI  LAR+FL   + 
Sbjct: 278 VDVRIIAATNTDLEAAVADGRFREDLYYRLKVVTLWLPPLRERSEDIPPLARYFLARFSR 337

Query: 361 EGTGNIVGFSPAAEQAMLRYAWPGNVRELENKVRRAVIFASGRRIMPDDLGFDETPAKAA 420
           E      G +P A   +    WPGNVREL N V +A++F+ G  +   DL      ++  
Sbjct: 338 EMDMPNPGITPEALAYLEAQPWPGNVRELGNSVHKALVFSRGGPLGEPDLKQALEASRGV 397

Query: 421 APRPEGSLREARNALERDM----------------------------VLSALDKCGGNIV 452
            P  EG   +   A ++ M                            V  AL   GGN  
Sbjct: 398 RPGSEGPACDLSLAADQTMQELIRRTLSESDGDNVFDSLMDHVGRLVVREALHLTGGNRT 457

Query: 453 QASLAIGVSRPTFYDLLRKHGI 474
           +A+  +G+SRPT    + K+G+
Sbjct: 458 RAARLLGLSRPTLLAKIEKYGL 479