Pairwise Alignments

Query, 476 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 491 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  303 bits (777), Expect = 7e-87
 Identities = 191/512 (37%), Positives = 272/512 (53%), Gaps = 68/512 (13%)

Query: 4   LLIVEDNEDVRRQLRWGLAKEPYDLHLAGSVDEALALQREHAPAVVTLDLGLPPDAEGAS 63
           +LI++D + +R  LR  L  E +++  A S ++ LAL     P +V LD+ +P       
Sbjct: 5   ILIIDDEDGIRFSLRGILEDEGFEVLEAPSGEDGLALLARETPDLVFLDIWMP-----GM 59

Query: 64  EGFRGLAALLDHDPRTKVIVVTGHHDMENALRAIEGGAYDFCQKPADLEMLKVIISRAFF 123
           +G   L  L    P   VI+++GH  +E A+ AI  GA+DF +KP  LE + +   RA  
Sbjct: 60  DGLAVLDQLHAQRPDLPVIMISGHGTIETAVNAIRKGAHDFIEKPLSLEKVLIAAQRA-- 117

Query: 124 LHGLQGGGAMASASGMASASGGASAPDAVSGAGAGGGKPDDGWQGIVGRCPSMRAVFETV 183
              L+ G        +  +   A A +                  + GR P M  +   +
Sbjct: 118 ---LEYGDLRRENEALRDSLPTAHADE------------------MNGRSPVMETLRGQI 156

Query: 184 AKVAVTGAPVLVTGESGTGKELVARAIHALGPRCTRTFVAINCGAIPDNLLEAEFFGYEK 243
           A+VA T A VL+TGE+GTGKEL ARAIHA   R  R  VA+NC AIP+ L+E+E FG+EK
Sbjct: 157 ARVAPTDAWVLITGENGTGKELAARAIHAGSRRADRPLVAVNCAAIPEELIESELFGHEK 216

Query: 244 GAFTGATQRVQGKVEYADGGTLFLDEIGELPANLQVKLLRFLQEKVIQRVGGRKDIAVDA 303
           GAFTGA     GK E A  GTLFLDEIG++    Q K+LR LQE+  +RVGG + + VD 
Sbjct: 217 GAFTGADSAKAGKFEMAHKGTLFLDEIGDMSLKTQAKILRILQEQQFERVGGHRTMRVDV 276

Query: 304 RIVAATNRDIQTEIASGRFREDLYYRIGVVPVALPPLRARGDDILLLARHFLESSAGEGT 363
           R++AATN++++ EIA+G FREDLYYR+ V P+ LPPLR R  D+ LL   F +  A +  
Sbjct: 277 RVIAATNKNLEDEIAAGTFREDLYYRLRVFPLVLPPLREREGDVPLLIDLFAQRLARDYG 336

Query: 364 GNIVGFSPAAEQAMLRYAWPGNVRELENKVRRAVIFASG----RRIMPDDL------GFD 413
                F+P A++A+ RY WPGNVREL N V R +I  +G    R ++P +       G +
Sbjct: 337 VRPATFAPDAQEALARYPWPGNVRELRNFVERMLILHAGLEVTRSMLPPEFLPRSGAGMN 396

Query: 414 ETPAKAAA------------------PRPEG------------SLREARNALERDMVLSA 443
            +P  A A                  P P+              L+ AR A E   + + 
Sbjct: 397 GSPGAATAAGGRAASGTGGATGQGGDPLPDHLPDMAALLAPGMDLKAARAAFEAQYLAAR 456

Query: 444 LDKCGGNIVQASLAIGVSRPTFYDLLRKHGIE 475
           L +CGGN+ + + A+G+ R   Y  L+ + I+
Sbjct: 457 LAECGGNVTRLAEAVGIERSHLYRKLKGYNIQ 488