Pairwise Alignments

Query, 476 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 456 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  317 bits (813), Expect = 4e-91
 Identities = 188/473 (39%), Positives = 273/473 (57%), Gaps = 34/473 (7%)

Query: 4   LLIVEDNEDVRRQLRWGLAKEPYDLHLAGSVDEALALQREHAPAVVTLDLGLPPDAEGAS 63
           LL+V+D+   R  L+  LA   Y    AG  + A+ L RE    ++ +DL +     G  
Sbjct: 9   LLVVDDDTTHRGMLQTLLADWGYRTECAGDGETAVTLCRETPFDLILMDLRM-----GVM 63

Query: 64  EGFRGLAALLDHDPRTKVIVVTGHHDMENALRAIEGGAYDFCQKPADLEMLKVIISRAFF 123
            G   L  +  ++P   ++++T + ++E+A+ AI  GAYD+  KP D E L++ + RA  
Sbjct: 64  SGIGALREIRAYNPAIPILIMTAYSNVESAVDAIRSGAYDYLTKPLDFEELRLTLERALD 123

Query: 124 LHGLQGGGAMASASGMASASGGASAPDAVSGAGAGGGKPDDGWQGIVGRCPSMRAVFETV 183
              L+   A A  + +AS+   A                     GI+G+  SM  + + +
Sbjct: 124 HAALRDENA-ALKTTLASSFDPA---------------------GIIGQSQSMHRLMDMM 161

Query: 184 AKVAVTGAPVLVTGESGTGKELVARAIHALGPRCTRTFVAINCGAIPDNLLEAEFFGYEK 243
           A +A + A VLVTGESGTGKEL+ARAIHA   R    +V +NC A+ + LLE+E FG+EK
Sbjct: 162 ASIAPSEATVLVTGESGTGKELIARAIHANSQRRHGPYVTVNCAALTETLLESELFGHEK 221

Query: 244 GAFTGATQRVQGKVEYADGGTLFLDEIGELPANLQVKLLRFLQEKVIQRVGGRKDIAVDA 303
           GAFTGA +R +G+ + AD GT+FLDEIGE    +Q KLLR +QE+ IQRVG  + + VD 
Sbjct: 222 GAFTGAEKRREGRFQSADKGTIFLDEIGETSLPMQAKLLRAIQEREIQRVGSDQTLRVDV 281

Query: 304 RIVAATNRDIQTEIASGRFREDLYYRIGVVPVALPPLRARGDDILLLARHFLESSAGEGT 363
           RI+AATNRD++ E+ +GRFR+DLYYR+ VV + +PPLR R +DI LLA HFL     +  
Sbjct: 282 RIIAATNRDLRAEVEAGRFRQDLYYRLNVVTLHVPPLRERVEDIPLLAGHFLRRFTEKNG 341

Query: 364 GNIVGFSPAAEQAMLRYAWPGNVRELENKVRRAVIFASG----RRIMPDDLGFDETPAKA 419
             + GF+P A   +L++ WPGNVRELEN   RAV+   G     R +P  +   +  A  
Sbjct: 342 KRVKGFTPQAMDRLLKHDWPGNVRELENAAERAVVLLVGEYISERELPHAIAGGDGDATC 401

Query: 420 AAPRPEGSLREARNALERDMVLSALDKCGGNIVQASLAIGVSRPTFYDLLRKH 472
           A PR  G   E    +ER  +L A+D   GN  +A+  +G++R T +  L ++
Sbjct: 402 AVPRFNGMTLE---EIERAAILDAMDASEGNKSEAARRLGITRKTLHAKLNRY 451