Pairwise Alignments

Query, 476 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 453 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  686 bits (1769), Expect = 0.0
 Identities = 360/478 (75%), Positives = 391/478 (81%), Gaps = 29/478 (6%)

Query: 1   MPGLLIVEDNEDVRRQLRWGLAKEPYDLHLAGSVDEALALQREHAPAVVTLDLGLPPDAE 60
           MPGLLI++DNEDVR+QLRWGL+KEPY L+LAGS +EALALQR H+PAVVTLDLGLPPDAE
Sbjct: 1   MPGLLIIDDNEDVRKQLRWGLSKEPYQLYLAGSTEEALALQRGHSPAVVTLDLGLPPDAE 60

Query: 61  GASEGFRGLAALLDHDPRTKVIVVTGHHDMENALRAIEGGAYDFCQKPADLEMLKVIISR 120
           G SEGFR L ALL  DPR +VIVVTGHHD+ENALRAI+GGAYDFC KPADL++LK+II R
Sbjct: 61  GTSEGFRALDALLKQDPRVQVIVVTGHHDVENALRAIQGGAYDFCHKPADLDVLKIIIGR 120

Query: 121 AFFLHGLQGG-GAMASASGMASASGGASAPDAVSGAGAGGGKPDDGWQGIVGRCPSMRAV 179
           AFFLHGL+   G      G                            QGIVG+CP+M AV
Sbjct: 121 AFFLHGLRDNVGPPVKRQGEC--------------------------QGIVGQCPAMLAV 154

Query: 180 FETVAKVAVTGAPVLVTGESGTGKELVARAIHALGPRCTRTFVAINCGAIPDNLLEAEFF 239
           FET++KVA +  PVLVTGESGTGKELVARAIHA   R +  FVAINCGAIPDNLLEAEFF
Sbjct: 155 FETISKVASSDVPVLVTGESGTGKELVARAIHAFSHRTSMPFVAINCGAIPDNLLEAEFF 214

Query: 240 GYEKGAFTGATQRVQGKVEYADGGTLFLDEIGELPANLQVKLLRFLQEKVIQRVGGRKDI 299
           GYEKGAFTGATQRVQGKVEYAD GTLFLDEIGELP NLQVKLLRFLQE VIQRVGGRKDI
Sbjct: 215 GYEKGAFTGATQRVQGKVEYADSGTLFLDEIGELPPNLQVKLLRFLQEMVIQRVGGRKDI 274

Query: 300 AVDARIVAATNRDIQTEIASGRFREDLYYRIGVVPVALPPLRARGDDILLLARHFLESSA 359
            VDARIVAATNRDIQ+EIASGRFREDLYYRIGVVP+ LPPLR RGDDILLLARHFLE  A
Sbjct: 275 RVDARIVAATNRDIQSEIASGRFREDLYYRIGVVPIVLPPLRTRGDDILLLARHFLERFA 334

Query: 360 GEGTGNIVGFSPAAEQAMLRYAWPGNVRELENKVRRAVIFASGRRIMPDDLGFDET-PAK 418
            E    +   SPAA QAMLR+ WPGNVRELENKVRRAVIFASG+ I P DLGFD+  PA 
Sbjct: 335 RERNHQVKMLSPAATQAMLRHNWPGNVRELENKVRRAVIFASGQHIAPADLGFDDAMPAD 394

Query: 419 A-AAPRPEGSLREARNALERDMVLSALDKCGGNIVQASLAIGVSRPTFYDLLRKHGIE 475
           A A PR EG+L+EARNALERD+VL+AL+KC GNIVQAS AIGVSRPTFYDLLRKHGIE
Sbjct: 395 APAPPRAEGTLKEARNALERDIVLTALEKCSGNIVQASQAIGVSRPTFYDLLRKHGIE 452