Pairwise Alignments

Query, 484 a.a., type III secretion system protein, YopQ family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 409 a.a., type III secretion system apparatus protein YscQ/HrcQ (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  263 bits (672), Expect = 8e-75
 Identities = 186/426 (43%), Positives = 216/426 (50%), Gaps = 93/426 (21%)

Query: 50  VSPAATALLNVLHTRSQPWRVQAGTLACGLSVPV--EQLPFVPAYSFRLLIGDASCRLDA 107
           ++P A  LLNVL TRSQPW V  G  AC LSVPV   + P  P Y  R+  G    RLD 
Sbjct: 21  LAPGAARLLNVLCTRSQPWPVTVGLAACRLSVPVLPPEAP-APEYGLRVRCGAHVWRLDV 79

Query: 108 GAGLPVHSHPALAGVQGDVDLPDALRLALAELLLAPHCTALATLLGTTVRAEAMETPPAA 167
           G GLP+  HPALA    D  LP+ ++LA+ ELL AP   AL   LGT+V  EA+      
Sbjct: 80  GPGLPLGLHPALAQADADAALPEEVQLAVVELLAAPLAEALGRFLGTSVTCEAL------ 133

Query: 168 STDAAPGVASGTSAGHDAPPPGS--CAVVLALSVPTGDTKGGTAAGGTTPAPDTGGDGDN 225
                    +G   G  A P G   C V L L VP                   G DG  
Sbjct: 134 ---------AGGLDGEAAQPAGDLPCRVGLLLEVP-------------------GDDG-- 163

Query: 226 RDSGSAGHTVVPLRLTLPVALATSLAAQLMALPERHTPREDIPVTVTIEAGRMRLAAHEL 285
                 GHT VPL L L  A +  LA Q + LP+RH  R  +PV V +EAGRM LAA EL
Sbjct: 164 ------GHTPVPLTLHLSDAASAMLAEQCLRLPQRHEARGHLPVDVVVEAGRMCLAAAEL 217

Query: 286 ATLAVDDVLLPEDYPALRGRIAL-MTGPHAFA------------CSLTEGRATVLDATPA 332
           A LA  D+LLP+DYPA RGR+ L +T P   A            C++ +GRATVLD    
Sbjct: 218 ADLAPGDILLPDDYPAHRGRLTLAVTDPAGPAQAPSPAPTLTVPCAVADGRATVLDIVRN 277

Query: 333 PNTP-ESPMSDQQTPEVPAG--------------------------------LDTAALEV 359
             TP E+ MSD      P G                                +D  AL V
Sbjct: 278 DATPMETTMSDTTPTPQPDGTPAADAAPAAEGSAAAAGAPAAEGTSAAAASSIDVNALGV 337

Query: 360 DIVFELERRTMKLNDLAALAPGYTFALGTDPLAPVTLRVQGRNIGRGRLVDLDGTPGVQV 419
            +VFELERR M + DLAALAPGYTFALG DPL PVTL V GR +G GRLVDL GT GVQV
Sbjct: 338 TVVFELERRPMTVGDLAALAPGYTFALGADPLGPVTLTVGGRAVGTGRLVDLGGTLGVQV 397

Query: 420 LHLESA 425
           L +  A
Sbjct: 398 LRMGQA 403