Pairwise Alignments

Query, 216 a.a., type III secretion system protein, YscR family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 250 a.a., Flagellar transport protein FliP from Pseudomonas syringae pv. syringae B728a

 Score =  150 bits (379), Expect = 2e-41
 Identities = 78/192 (40%), Positives = 123/192 (64%), Gaps = 7/192 (3%)

Query: 13  MALLGLAPFFLMMVTSYVKIVVVTSLVRNALGVQQVPPTMVMNGLAIILSIFIMAPVASG 72
           M  L   P F+M++TS+ +I++V S++R ALG+QQ P   ++ G+A+ L++FIMAPV   
Sbjct: 52  MTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQAPSNQILTGMALFLTMFIMAPVFDR 111

Query: 73  TLDLMQNMKIGPDPAPREIIALLDKASPPLRGFLERNADDKVVTVFMSTAKRIWPADQHA 132
                    +    + ++ +A   KA  P++ F+        + +FM  +KR       A
Sbjct: 112 VNQDALQPYLAEKLSAQDAVA---KAQVPIKDFMLAQTRTSDLELFMRLSKRTDIPTPDA 168

Query: 133 SISRDNLLILIPSFTISELTRAFQIGFLLYLPFVAIDLVISNILLAMGMMMVSPMTISLP 192
           +     L IL+P+F ISEL  AFQIGF++++PF+ IDLV++++L+AMGMMM+SP+ ISLP
Sbjct: 169 A----PLTILVPAFVISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLP 224

Query: 193 FKLLLFVTLDGW 204
           FK++LFV +DGW
Sbjct: 225 FKIMLFVLVDGW 236