Pairwise Alignments

Query, 216 a.a., type III secretion system protein, YscR family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 243 a.a., flagellar type III secretion system pore protein FliP from Pantoea sp. MT58

 Score =  140 bits (354), Expect = 2e-38
 Identities = 84/215 (39%), Positives = 124/215 (57%), Gaps = 17/215 (7%)

Query: 6   PLYFIAGMALLGLAPFFLMMVTSYVKIVVVTSLVRNALGVQQVPPTMVMNGLAIILSIFI 65
           P+  +  +  L   P  L+M+TS+ +I++V  L+RNALG    PP  V+ GL++ L+ FI
Sbjct: 39  PVQTLVFITALTFIPAVLLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLSLFLTFFI 98

Query: 66  MAPV-----ASGTLDLMQNMKIGPDPAPREIIALLDKASPPLRGFLERNADDKVVTVFMS 120
           MAP          L   Q+ KI  D A       +DK + PLR F+ R   +  + +F  
Sbjct: 99  MAPTFDKIYQDAYLPFSQD-KISMDVA-------IDKGAQPLREFMLRQTREADLALFAR 150

Query: 121 TAKRIWPADQHASISRDNLLILIPSFTISELTRAFQIGFLLYLPFVAIDLVISNILLAMG 180
            A     A   A   R    IL+P++  SEL  AFQIGF +++PF+ IDLV++++L+A+G
Sbjct: 151 LANTAPIAGPEAVPMR----ILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALG 206

Query: 181 MMMVSPMTISLPFKLLLFVTLDGWLKVSQGLLLSY 215
           MMMV P +I+LPFKL+LFV +DGW  +   L  S+
Sbjct: 207 MMMVPPASIALPFKLMLFVLVDGWQLLVGSLAQSF 241