Pairwise Alignments

Query, 216 a.a., type III secretion system protein, YscR family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 249 a.a., flagellar type III secretion system pore protein FliP from Ralstonia sp. UNC404CL21Col

 Score =  140 bits (352), Expect = 3e-38
 Identities = 77/203 (37%), Positives = 124/203 (61%), Gaps = 15/203 (7%)

Query: 6   PLYFIAGMALLGLAPFFLMMVTSYVKIVVVTSLVRNALGVQQVPPTMVMNGLAIILSIFI 65
           P+  +  +  LG  P  ++M++S+ +I++V SL+R+ALG Q  PP  V+ GLA+ L+ F+
Sbjct: 45  PVQTLVFLTSLGFLPAIILMMSSFTRIIIVLSLLRHALGTQTTPPNQVLIGLALFLTFFV 104

Query: 66  MAPVASGTLD----LMQNMKIGPDPAPREIIALLDKASPPLRGFLERNADDKVVTVFMST 121
           M+PV           +++ KI  + A       +D A+ PLR F+ +   +  + +F+  
Sbjct: 105 MSPVLDKVYTDAYVPLRDNKITVEQA-------MDTAATPLRQFMLKQTREPDLALFVKM 157

Query: 122 AKRIWPADQHASISRDNLLILIPSFTISELTRAFQIGFLLYLPFVAIDLVISNILLAMGM 181
                PA   AS  +  +  LIP+F  SEL  AFQIGF +++PF+ ID+V++ +L++MGM
Sbjct: 158 GNM--PAI--ASPEQTPMRALIPAFVTSELKSAFQIGFAIFIPFLVIDIVVAAVLMSMGM 213

Query: 182 MMVSPMTISLPFKLLLFVTLDGW 204
           MMV+P   SLPFK++LFV +DGW
Sbjct: 214 MMVTPSIFSLPFKIMLFVLVDGW 236