Pairwise Alignments

Query, 465 a.a., sigma-54 dependent DNA-binding response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 462 a.a., Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Pseudomonas stutzeri RCH2

 Score =  257 bits (656), Expect = 7e-73
 Identities = 167/468 (35%), Positives = 249/468 (53%), Gaps = 19/468 (4%)

Query: 3   RILVVDDESLVRILVADTAGGMGHEVLAAASLTEAEEKAAKGID-VVFLDVLLPDGNGLE 61
           R+L+V+D+  +R L+ +     G +V A AS  EA          +V  D+ LP  +G+ 
Sbjct: 8   RVLLVEDDDSLRQLLVEELEDRGLQVRALASAEEAVGSLESWEPALVVSDLRLPGADGMA 67

Query: 62  NVARFTRLPGTPEVIVITGHGSADGAETALRHGVWDYVQKPLKVQEVMLSLSRALAYRAG 121
            + R   +   P  +VIT  GS   A  AL+ G  +++ KPL ++   L+++RAL  R  
Sbjct: 68  LLRRVKSMQAAPAFLVITAFGSIQQAVAALKEGADEFLTKPLDLEHFGLAVARALETRRL 127

Query: 122 RNSATGRRPLRRD----AIVGDSPALREALDLVEEAAASTVNVLITGETGTGKELFARAV 177
           R+     + L  D     ++G S  +R   D + + A +   VL+ GE+GTGKEL ARAV
Sbjct: 128 RDEVRRFQQLLSDDRFHGMLGRSRVMRGLFDQIRQLARAEGPVLVIGESGTGKELVARAV 187

Query: 178 HANSARCESPLVTLDCASLTENLVESQLFGHVRGAFTGAERNSEGLLRQAHGGTLFLDEA 237
           HA S R   P + ++CA L   L+ES+ FGHV GAFTGA R  +GL +QA GGTLFLDE 
Sbjct: 188 HAESERANRPFLAINCAGLPAELLESEFFGHVAGAFTGANRAHKGLFQQADGGTLFLDEI 247

Query: 238 GDLPLAMQGSFLRALELRRFRPVGSAHEVSSDFRLVAATNKNLHEMTRLDLFRSDLLYRL 297
           G++PL +Q   LR L+    RPVG+  E++ D R++AA+N+ L      + FR DL +RL
Sbjct: 248 GEMPLPLQAKLLRVLQEGTIRPVGAERELTVDVRIIAASNRPLETEAGREAFREDLFFRL 307

Query: 298 RGLTITLPPLRDRTADILPLCEHVIEGYCAQHGAPMKQMAGDFMETVERYAWPGNIRELR 357
               + +PPLRDR  D+  L    +  + A+ G P++ +A   +  + RY +PGN+REL+
Sbjct: 308 ETFILQVPPLRDREEDLELLAAGFVAHFAARSGRPVRGLAPAVLAQLRRYPFPGNVRELQ 367

Query: 358 HAVERACTAAHDDSTLYARQLPVEVRVTVARATIPCASEVDHCMPAAEGHDGTPM-TLRD 416
           +A+ERA T  H  S +    LP  +            +E+      A+  DG  + TL +
Sbjct: 368 NAIERAVTFCHGRS-IELEHLPSRIADYRDDNARSAGAEL-----LAQLSDGPLLPTLEE 421

Query: 417 YKACAERAYVTRLLDRHGADVRAAASEAGISRGHLYELVRKHGLARDG 464
                E  Y+  +L     + R AA+  GI R  LY   R+ G   DG
Sbjct: 422 ----LELRYIEHVLKLVDGNKRRAAALLGIGRRTLY---RRLGEREDG 462