Pairwise Alignments

Query, 479 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 543 a.a., sigma-54-dependent Fis family transcriptional regulator from Rhodopseudomonas palustris CGA009

 Score =  261 bits (667), Expect = 4e-74
 Identities = 136/299 (45%), Positives = 186/299 (62%), Gaps = 8/299 (2%)

Query: 156 SPRMREVYDKIRLVAATRSTVLLTGETGTGKSLIARLIHSHSNRHGKRFISVHCGAIPEA 215
           S  M+ VYD I+ VA T++TVL+ GE+G GK L+A  +H +S      F+  +C A+PE 
Sbjct: 223 SKPMQAVYDLIQKVATTKTTVLILGESGVGKELVANAMHYNSGNADGPFVKFNCAALPEN 282

Query: 216 LVESELFGHEKGAFTGAIRKKPGRFEIAEGGTIFLDEIGTIGPSVQIKLLNVLQDRCFQR 275
           +VESELFGHEKG+FTGA+  + GRFE+A+GGTIFLDE+G +   +Q KLL V+Q+R F+R
Sbjct: 283 IVESELFGHEKGSFTGAVGMRKGRFELADGGTIFLDEVGELSLPMQAKLLRVIQERTFER 342

Query: 276 VGGETVIRPDVRVVAATNEDLSTLCAQGRFRRDLYYRLNVFPIDIPPLRERKEDILQLAE 335
           VGG   ++ D+R++AATN +L  + A+G FR DLYYRLNVFPI IPPLR+R  D++ LA+
Sbjct: 343 VGGNKPVKVDLRIIAATNRNLLDMVAKGTFREDLYYRLNVFPITIPPLRDRGSDVVLLAD 402

Query: 336 AFVRRCNPQRSRDIRAIHPDVIDAFMRYDWPGNVRELENIIERACILEGGEVLSPEAFPA 395
            FV R      +D++ I    ++  M Y WPGNVRELEN+IER+ IL    V+     P 
Sbjct: 403 HFVARSAAAAGKDVKRISTPALNMLMAYHWPGNVRELENVIERSVILSDDGVIHGYNLPP 462

Query: 396 EFRGLPHAVRNRALDISLPLEAARRHALDSFEREYLERALATSGGSIKGAAAIAGVTTR 454
             +       N    +   +EA         E E +  AL T  G+   AA   G+T R
Sbjct: 463 SLQTSEETGTNFGCSMEAKVEAV--------EYEMIVEALKTHNGNTTEAAKELGLTRR 513