Pairwise Alignments

Query, 479 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 459 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  269 bits (688), Expect = 1e-76
 Identities = 155/418 (37%), Positives = 244/418 (58%), Gaps = 13/418 (3%)

Query: 51  DMDILCGGTTTDYETIRQAVHGFRQQHPSVDLIVLARADAIRQAVDAVRAGAGNYLTYPL 110
           ++D++         T R+ +   ++  P + ++++    +I  AV+ ++ GA +Y+T P 
Sbjct: 48  EVDVIVTDMKMPKITGREVLEQVKKNWPHIPVLIMTAFGSIESAVEVMKYGAFDYITKPF 107

Query: 111 HPEEVRLVTQKLHESALVRSELDYLRDRLIQGRSGGDEGIVLDTRSPRMREVYDKIRLVA 170
             +E+ L      E + +  +   LR+ L + R G  + I    +S  +RE    +   A
Sbjct: 108 SNDELLLSVHNAAELSRMHRQYRVLRENL-EERYGMHQII---GKSRAIRETLGMVDRAA 163

Query: 171 ATRSTVLLTGETGTGKSLIARLIHSHSNRHGKRFISVHCGAIPEALVESELFGHEKGAFT 230
            +RSTVL++GE+GTGK L+AR IH  S R+   F+SV+C A+   ++ESELFGHEKG+FT
Sbjct: 164 PSRSTVLISGESGTGKELVARAIHFSSPRNKGPFVSVNCMALNPGVLESELFGHEKGSFT 223

Query: 231 GAIRKKPGRFEIAEGGTIFLDEIGTIGPSVQIKLLNVLQDRCFQRVGGETVIRPDVRVVA 290
           GA+  + GRFE A GGT+FLDEIG + P +Q+KLL VLQ+R F+RVGG   +  D+R+VA
Sbjct: 224 GAVAMRRGRFEQAGGGTLFLDEIGELTPELQVKLLRVLQERRFERVGGTEEVEVDIRIVA 283

Query: 291 ATNEDLSTLCAQGRFRRDLYYRLNVFPIDIPPLRERKEDILQLAEAFVRRCNPQRSRDIR 350
           ATN++L     +G FR DL+YRLNV  I +PPLRER+EDI  L   FV +   +     +
Sbjct: 284 ATNKNLQEEVEKGNFREDLFYRLNVVHIALPPLRERREDIHLLVAHFVDKLARENGVTPK 343

Query: 351 AIHPDVIDAFMRYDWPGNVRELENIIERACILEGGEVLSPEAFPAEFRGLPHAVRNRALD 410
              P+ +D    Y+WPGN+R+L+N++ER  +L  G+ +  +  P E R     +++ A+D
Sbjct: 344 TFTPEALDYMTGYEWPGNIRQLQNVVERCLVLVSGDTIRVDDLPPELRDEESQLKS-AVD 402

Query: 411 ISLPLEAARRHALDSFEREYLERALATSG-GSIKGAAAIAGVTTRQIHKLMTRHSLKK 467
           + LP++      L+  E   + RAL  +    +K A  +A      I K + ++ LKK
Sbjct: 403 L-LPVQLDLADTLERIEAALIRRALVRADFVQVKAAELLA------ISKSLLQYKLKK 453