Pairwise Alignments

Query, 479 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 515 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  281 bits (719), Expect = 4e-80
 Identities = 177/488 (36%), Positives = 260/488 (53%), Gaps = 33/488 (6%)

Query: 7   ATMDPAALAVLPRCFTPDIDLELSRSTAGMKSRLAARAHD----IALVDMDILCGGTTTD 62
           AT  PA + V+        +L L+    G ++  AA   +    +A  D D++       
Sbjct: 32  ATPGPARILVVDDEAIARDNLALALGRQGHETFTAANGAEALELLAGADFDLVLTDLMMQ 91

Query: 63  YETIRQAVHGFRQQHPSVDLIVLARADAIRQAVDAVRAGAGNYLTYPLHPEEVRLVTQKL 122
                  +   R +HP  +++V+     ++ AV+A+ AGA +YL  P    E R + QK 
Sbjct: 92  GMDGLDLLRAVRMRHPDTEVVVVTGYPTVKTAVEAMHAGAYHYLPKPYDLNEARALVQKA 151

Query: 123 HESALVRSELDYLRDRLIQGRSGGDEGIVLDTRSPRMREVYDKIRLVAATRSTVLLTGET 182
            E   +R E+  LR++L +        + L   +P M+ +   I  VA +  TVL+ GET
Sbjct: 152 LEKRRLRQEVARLREQLRERSLP----VPLLGSAPCMQALKRTIAQVAPSDVTVLILGET 207

Query: 183 GTGKSLIARLIHSHSNRHGKRFISVHCGAIPEALVESELFGHEKGAFTGAIRKKPGRFEI 242
           GTGK L AR++H  S R   RF++++CGA  E L+ESELFGHE+GAF+GA+R++ G FE 
Sbjct: 208 GTGKELAARMVHLFSRRSEARFLAINCGAFNEELLESELFGHEQGAFSGAVRQRKGLFEA 267

Query: 243 AEGGTIFLDEIGTIGPSVQIKLLNVLQDRCFQRVGGETVIRPDVRVVAATNEDLSTLCAQ 302
           AEGGT+FLDE+G +   +Q+KLL  +Q+R  +RVGG   I  DVR++AATN+DL+   A 
Sbjct: 268 AEGGTLFLDEVGEMSLPMQVKLLRAVQERTIRRVGGTADIPVDVRLLAATNKDLAAEAAA 327

Query: 303 GRFRRDLYYRLNVFPIDIPPLRERKEDILQLAEAFVRRCNPQRSRDIRAIHPDVIDAFMR 362
           GRFR DLYYRLNV  + +PPL ER ED+  LA+ F  +      R    I P+ +    R
Sbjct: 328 GRFRHDLYYRLNVVVLRMPPLAERMEDVPLLAQYFAEKAARDTGRPAPHIAPETLGVLAR 387

Query: 363 YDWPGNVRELENIIERACILEGGEVLSPEAFPAEFRGLP--------HAVRNRALDISLP 414
           Y +PGNVREL NIIERA +L  G+V++P   P + R L         +  +  A   +L 
Sbjct: 388 YPFPGNVRELHNIIERAAVLCAGDVITPADLPPDLRALAGIAGGAGGNGGKGGAAGPALV 447

Query: 415 LEA-----------------ARRHALDSFEREYLERALATSGGSIKGAAAIAGVTTRQIH 457
           L A                  R   LD  ER ++E  L  +GG+   AA +  +    + 
Sbjct: 448 LRADEAARMPGGAGEGMTPDGRPMTLDENERAHIEWVLELAGGNRTHAAKVLDIDRASLW 507

Query: 458 KLMTRHSL 465
           + + R+ L
Sbjct: 508 RKLKRYGL 515