Pairwise Alignments

Query, 479 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 470 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  613 bits (1581), Expect = e-180
 Identities = 315/471 (66%), Positives = 370/471 (78%), Gaps = 4/471 (0%)

Query: 1   MRYVLAATMDPAALAVLPRCFTPDIDLELSRSTAGMKSRLAARAHDIALVDMDILCGGTT 60
           M+Y+LA T    AL VL   F+ D+ +   R+ A   ++   RA D+ ++D+  L  G  
Sbjct: 1   MKYLLAVTPHEDALHVLRTSFSGDVSVIPCRTRAEALAQATGRALDMVMIDLGQLLEGRE 60

Query: 61  TDYETIRQAVHGFRQQHPSVDLIVLARADAIRQAVDAVRAGAGNYLTYPLHPEEVRLVTQ 120
                + +AV   +++ PS ++IVLA ADA+R AVDAV+AGAG YL YPL  EEVRLV Q
Sbjct: 61  PSRRVLHEAVWEVKRRVPSAEIIVLAEADAVRHAVDAVQAGAGGYLPYPLLEEEVRLVAQ 120

Query: 121 KLHESALVRSELDYLRDRLIQGRSGGDEGIVLDTRSPRMREVYDKIRLVAATRSTVLLTG 180
           KLHESALVRSELDYLRDR       GD   +  T SPRMREV+DK+RLVA TRSTVLLTG
Sbjct: 121 KLHESALVRSELDYLRDR----HWAGDGVDLAHTNSPRMREVFDKVRLVAGTRSTVLLTG 176

Query: 181 ETGTGKSLIARLIHSHSNRHGKRFISVHCGAIPEALVESELFGHEKGAFTGAIRKKPGRF 240
           ETGTGKSLIARLIH+HSNR  +RFISVHCGAIP+ L+ESELFGHEKGAFTGA+RKKPG+F
Sbjct: 177 ETGTGKSLIARLIHNHSNRRTRRFISVHCGAIPDTLIESELFGHEKGAFTGAVRKKPGKF 236

Query: 241 EIAEGGTIFLDEIGTIGPSVQIKLLNVLQDRCFQRVGGETVIRPDVRVVAATNEDLSTLC 300
           EIAEGGTIFLDEIGT+  S QIKLL VLQDR +QRVGGE V+R DVRV+AATNEDL+ LC
Sbjct: 237 EIAEGGTIFLDEIGTVSQSAQIKLLGVLQDRAYQRVGGEAVLRADVRVIAATNEDLAALC 296

Query: 301 AQGRFRRDLYYRLNVFPIDIPPLRERKEDILQLAEAFVRRCNPQRSRDIRAIHPDVIDAF 360
           AQGRFRRDLYYRLNVFP+D+PPLRERKED+L LAE FVRR N Q  +DIR+IHP+VIDAF
Sbjct: 297 AQGRFRRDLYYRLNVFPVDVPPLRERKEDLLLLAELFVRRYNAQMVKDIRSIHPEVIDAF 356

Query: 361 MRYDWPGNVRELENIIERACILEGGEVLSPEAFPAEFRGLPHAVRNRALDISLPLEAARR 420
           M YDWPGNVRELEN+IERACILE G VL+P++FPAEF G     R   +D +LPL  ARR
Sbjct: 357 MGYDWPGNVRELENLIERACILESGTVLTPDSFPAEFFGPGGGGRLATVDTTLPLAEARR 416

Query: 421 HALDSFEREYLERALATSGGSIKGAAAIAGVTTRQIHKLMTRHSLKKEDFK 471
            ++D FER YLERALA  GGS++  AA+AGVTTRQ+HKLMTRH L+KED+K
Sbjct: 417 RSVDVFERAYLERALAQCGGSVQRTAALAGVTTRQLHKLMTRHGLRKEDYK 467