Pairwise Alignments

Query, 479 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 491 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  274 bits (700), Expect = 6e-78
 Identities = 169/426 (39%), Positives = 234/426 (54%), Gaps = 37/426 (8%)

Query: 76  QHPSVDLIVLARADAIRQAVDAVRAGAGNYLTYPLHPEEVRLVTQKLHESALVRSELDYL 135
           Q P + +I+++    I  AV+A+R GA +++  PL  E+V +  Q+  E   +R E + L
Sbjct: 71  QRPDLPVIMISGHGTIETAVNAIRKGAHDFIEKPLSLEKVLIAAQRALEYGDLRRENEAL 130

Query: 136 RDRLIQGRSGGDEGIVLDTRSPRMREVYDKIRLVAATRSTVLLTGETGTGKSLIARLIHS 195
           RD L    +  DE   ++ RSP M  +  +I  VA T + VL+TGE GTGK L AR IH+
Sbjct: 131 RDSLPTAHA--DE---MNGRSPVMETLRGQIARVAPTDAWVLITGENGTGKELAARAIHA 185

Query: 196 HSNRHGKRFISVHCGAIPEALVESELFGHEKGAFTGAIRKKPGRFEIAEGGTIFLDEIGT 255
            S R  +  ++V+C AIPE L+ESELFGHEKGAFTGA   K G+FE+A  GT+FLDEIG 
Sbjct: 186 GSRRADRPLVAVNCAAIPEELIESELFGHEKGAFTGADSAKAGKFEMAHKGTLFLDEIGD 245

Query: 256 IGPSVQIKLLNVLQDRCFQRVGGETVIRPDVRVVAATNEDLSTLCAQGRFRRDLYYRLNV 315
           +    Q K+L +LQ++ F+RVGG   +R DVRV+AATN++L    A G FR DLYYRL V
Sbjct: 246 MSLKTQAKILRILQEQQFERVGGHRTMRVDVRVIAATNKNLEDEIAAGTFREDLYYRLRV 305

Query: 316 FPIDIPPLRERKEDILQLAEAFVRRCNPQRSRDIRAIHPDVIDAFMRYDWPGNVRELENI 375
           FP+ +PPLRER+ D+  L + F +R             PD  +A  RY WPGNVREL N 
Sbjct: 306 FPLVLPPLREREGDVPLLIDLFAQRLARDYGVRPATFAPDAQEALARYPWPGNVRELRNF 365

Query: 376 IERACILEGGEVLSPEAFPAEF-----------RGLPHAVRNRA--------------LD 410
           +ER  IL  G  ++    P EF            G   A   RA              L 
Sbjct: 366 VERMLILHAGLEVTRSMLPPEFLPRSGAGMNGSPGAATAAGGRAASGTGGATGQGGDPLP 425

Query: 411 ISLPLEAA-------RRHALDSFEREYLERALATSGGSIKGAAAIAGVTTRQIHKLMTRH 463
             LP  AA        + A  +FE +YL   LA  GG++   A   G+    +++ +  +
Sbjct: 426 DHLPDMAALLAPGMDLKAARAAFEAQYLAARLAECGGNVTRLAEAVGIERSHLYRKLKGY 485

Query: 464 SLKKED 469
           +++  D
Sbjct: 486 NIQTTD 491