Pairwise Alignments

Query, 479 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 350 a.a., sigma54 specific transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  263 bits (672), Expect = 7e-75
 Identities = 152/338 (44%), Positives = 199/338 (58%), Gaps = 28/338 (8%)

Query: 155 RSPRMREVYDKIRLVAATRSTVLLTGETGTGKSLIARLIHSHSNRHGKRFISVHCGAIPE 214
           +S  +R+V+  +  VA T STVL+TGE+GTGK L+ R +HS+S R    F+ ++CGAIP+
Sbjct: 11  QSTSLRDVFRILAKVAPTDSTVLVTGESGTGKELLVRALHSNSQRRSMPFVPINCGAIPK 70

Query: 215 ALVESELFGHEKGAFTGAIRKKPGRFEIAEGGTIFLDEIGTIGPSVQIKLLNVLQDRCFQ 274
            L+ESELFGHEKGAFT AIR +PGRFE+A+GGTIFLDEIG +  ++Q+K+L VLQ++  +
Sbjct: 71  ELLESELFGHEKGAFTHAIRSRPGRFELADGGTIFLDEIGEMDLTLQVKILRVLQEKEIE 130

Query: 275 RVGGETVIRPDVRVVAATNEDLSTLCAQGRFRRDLYYRLNVFPIDIPPLRERKEDILQLA 334
           RVGG  V + DVR+VAATN DL    A GRFR DLYYRLNV P+ +P LRER  DIL LA
Sbjct: 131 RVGGAGVKKVDVRIVAATNRDLEREVAAGRFREDLYYRLNVIPLHLPALRERGGDILVLA 190

Query: 335 EAFVRRCNPQRSRDIRAIHPDVIDAFMRYDWPGNVRELENIIERACILEGGEVLSPEAFP 394
           E F+RR   ++ R   A+ PD       Y WPGNVRELEN +ER  IL   +V+ P   P
Sbjct: 191 EHFMRRFCERKGRRCLALAPDTRKVLAAYSWPGNVRELENFMERLSILADDDVVPPADLP 250

Query: 395 -------AEFRGLPHAVRNRALDISLPLEAARRHA--------------------LDSFE 427
                   +   LP       L ++    +    A                    LD+ E
Sbjct: 251 RKILDEVGDIVSLPEPTPPDPLPVATGAASGGMPAGFSWPTITDLRDKGMNLKDFLDTVE 310

Query: 428 REYLERALATSGGSIKGAAAIAGV-TTRQIHKLMTRHS 464
              L+ AL  + G    AA I G+  T  I KL  + +
Sbjct: 311 ERLLDEALTMAEGVKNQAAEILGIKRTTLIEKLKKKRA 348